Sequence
atgc intronic sequence ATGC exonic sequence...tccactcttaaaattatttcattcattatctttgattaagagaagcattctggttcttgcatatatgtatatgctgatgatgaggttgcattcatggcagGGAGGAATACTGCTCGGCCCATCTGCGTTGGGGCGAAGTACCAAGTTTCTGCACAGAGTCTTCCCTGCCAGAAGCATGACTGTCCTGGACACTGTGGCCA
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37185255|gb|CF604608.1|CF604608EST: CCTTGATTCTGAAACCTCTCAGACAGCCCAGAGTCATTGCAGAGATTATC GGAGGAATACTGCTCGGCCCATCTGCGTTGGGGCGAAGTACCAAGTTTCTG
genomic: CCTTGATTCTGAAACCTCTCAGACAGCCCAGAGTCATTGCAGAGATTATCgtgagtcccc ... ttcatggcagGGAGGAATACTGCTCGGCCCATCTGCGTTGGGGCGAAGTACCAAGTTTCTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattctggttcttgcatatatgtatatgctgatgatgaggttgcattcatggcagGGAGGAATACTGCTCGGCCCATCTGCGTTGGGGCGAAGTACCAAGTTTCTGCACAGAGTCTTCCCTGCCAGAAGCATGACTGTCCTGGACACTGTGGCCA
tgctgat putative branch site (score: 3)
atatatgtatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tccactcttaaaattatttcattcattatctttgattaagagaagcattctggttcttgcatatatgtatatgctgatgatgaggttgcattcatggcagGGAGGAATACTGCTCGGCCCATCTGCGTTGGGGCGAAGTACCAAGTTTCTGCACAGAGTCTTCCCTGCCAGAAGCATGACTGTCCTGGACACTGTGGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
tccactc
- - - - -aaaatta
- - - - - - - - - -cattcat
- - - - - - - - - - - - - - - - - - -aagagaa
- - - - - - - - - - - - - - - - - - - - - - gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgctg