Sequence
atgc intronic sequence ATGC exonic sequence...aaagctggtccagtggtttagttttggttattgtgagctttctcatagtaaatcagaaagcatattataccttcttgacctttctgttctgtatgcgcagTATGCCTGGATGGAACATTACCTGGTTACCACCTCCACCGGGGATATGGGTCAGGGGCAAATAGTTGGCTCATTCATTTGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01110.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G160569_T02 (Zea mays), 3'ss of exon 1
-aaagctggtccagtggtttagttttggttattgtgagctttctcatagtaaatcagaaagcata-ttataccttcttgacctttctgttctgtatgcgcagTATGCCTGGATGGAACATTACCTGGTTACCACCTCCACCGGGGATATGGGTCAGGGGCAAATAGTTGGCTCATTCATTTGGAG
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caattctggtc-agaattccagtgctggaaattttagtctagcttgtagcagggcagtgctggtaatggttgatgcttacttcttgtgataaccat-tacagTGTGCTTGGATGGAAGCTTACCAGGTTACCACCTCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAG
upper sequence: Vv05s0020g01110.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G04770.1 (Glycine max), 3'ss of exon 1
-aaagctggtccagtggtttagttttggttattgtgagctttctcatagtaaatcagaaagcatattat-accttcttgacctttctgttctgtatgcgcagTATGCCTGGATGGAACATTACCTGGTTACCACCTCCACCGGGGATATGGGTCAGGGGCAAATAGTTGGCTCATTCATTTGGAG
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ttaggatcattatgcagttgacagctgcaaaacacacaaaaaaaagttatcagcta-attgctcattattacatagcgtgattttttgttcttt-tgcacagTCTGCCTGGATGGATCTTTACCGGGGTACCACTTCCACCGTGGATATGGTTCAGGATCAAACAGTTGGCTCATACAATTGGAG
upper sequence: Vv05s0020g01110.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G17740.1 (Glycine max), 3'ss of exon 1
aaagctggtccagtggtttagttttggttattgtgagctttctcatagtaaatcagaaagcatattataccttcttgacct---ttctgttctgtatgcgcagTATGCCTGGATGGAACATTACCTGGTTACCACCTCCACCGGGGATATGGGTCAGGGGCAAATAGTTGGCTCATTCATTTGGAG
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-tttagaatttaggatcattatgccgatgacagctgcaaaacacaaagtta-tcagataattgctcattattacatagcttgatttttgttcttt-tgtacagTTTGCCTGGATGGATCTTTACCGGGGTACCATTTCCACCGTGGATATGGTTCAGGATCAAACAGTTGGCTCATACAATTGGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110376388|gb|EC941450.1|EC941450EST: ATTGATGGTGGGTCTTTCTCTTATTGCCGGAGCTGCTTCCACTGGAGCAG TATGCCTGGATGGAACATTACCTGGTTACCACCTCCACCGGGGATATGGGT
genomic: ATTGATGGTGGGTCTTTCTCTTATTGCCGGAGCTGCTTCCACTGGAGCAGgtattttact ... gtatgcgcagTATGCCTGGATGGAACATTACCTGGTTACCACCTCCACCGGGGATATGGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagtaaatcagaaagcatattataccttcttgacctttctgttctgtatgcgcagTATGCCTGGATGGAACATTACCTGGTTACCACCTCCACCGGGGATATGGGTCAGGGGCAAATAGTTGGCTCATTCATTTGGAG
tcttgac putative branch site (score: 3)
cctttctgttctgt CT-rich tract
atattata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaagctggtccagtggtttagttttggttattgtgagctttctcatagtaaatcagaaagcatattataccttcttgacctttctgttctgtatgcgcagTATGCCTGGATGGAACATTACCTGGTTACCACCTCCACCGGGGATATGGGTCAGGGGCAAATAGTTGGCTCATTCATTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagca