1 5' 3' | 2 5' 3' | 3 5' 3' |
gtcagttttctcacttctctcgatcaccattaatttgcaggtccttcggtttcgtttttgttttgggccataaggatttcttgcatgtagGCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATACTGAGGAGTTTGCTCGGAGAGAGGTGAAGCTCTTGGGATTGTCCTGTGA
species | Vitis vinifera |
transcript | Vv05s0020g00600.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAG GCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATAEST: gi|22008129|gb|BQ793163.1|BQ793163
genomic: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAGgtcagttttc ... ttgcatgtagGCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATA
EST: GCTCCATGACTACATCGGAGATAGATGGACCATATTCTTCTCCCACCCAG GCGATTTCACGCCGGTGTGGACTACGGAGCTCGGTAAGATGGCTGCGTATAEST: gi|30133724|gb|CB919063.1|CB919063
genomic: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAGgtcagttttc ... ttgcatgtagGCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATA
EST: GCTCCATGACTACATCGGAGATAGGTGGACCATAATCTTCTCCCACCCAG GCGATTTCACGCCGGTGTGCACTACGGAGCTCGGGAAGATGGCTGCGTATAEST: gi|27582335|gb|CB005030.1|CB005030
genomic: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAGgtcagttttc ... ttgcatgtagGCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATA
EST: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAG GCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATAEST: gi|30126734|gb|CB912073.1|CB912073
genomic: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAGgtcagttttc ... ttgcatgtagGCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATA
EST: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAG GCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATAEST: gi|30134777|gb|CB920115.1|CB920115
genomic: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAGgtcagttttc ... ttgcatgtagGCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATA
EST: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAG GCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATAEST: gi|30133782|gb|CB919121.1|CB919121
genomic: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAGgtcagttttc ... ttgcatgtagGCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATA
EST: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAG GCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATAEST: gi|110365492|gb|EC928569.1|EC928569
genomic: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAGgtcagttttc ... ttgcatgtagGCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATA
EST: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAG GCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATAEST: gi|30134151|gb|CB919489.1|CB919489
genomic: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAGgtcagttttc ... ttgcatgtagGCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATA
EST: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAG GCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATAEST: gi|110397422|gb|EC963157.1|EC963157
genomic: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAGgtcagttttc ... ttgcatgtagGCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATA
EST: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAG GCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATAEST: gi|27583177|gb|CB005872.1|CB005872
genomic: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAGgtcagttttc ... ttgcatgtagGCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATA
EST: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAG GCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATAEST: gi|30136361|gb|CB921699.1|CB921699
genomic: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAGgtcagttttc ... ttgcatgtagGCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATA
EST: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAG GCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATAEST: gi|27586984|gb|CB009679.1|CB009679
genomic: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAGgtcagttttc ... ttgcatgtagGCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATA
EST: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAG GCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATA
genomic: GCTCCATGACTACATCGGAGATAGATGGACCATAATCTTCTCCCACCCAGgtcagttttc ... ttgcatgtagGCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATA
tgcaggtccttcggtttcgtttttgttttgggccataaggatttcttgcatgtagGCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATACTGAGGAGTTTGCTCGGAGAGAGGTGAAGCTCTTGGGATTGTCCTGTGA
tttcttgc CT-rich tract
tttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttttctcacttctctcgatcaccattaatttgcaggtccttcggtttcgtttttgttttgggccataaggatttcttgcatgtagGCGATTTCACGCCGGTGTGCACTACGGAGCTCGGTAAGATGGCTGCGTATACTGAGGAGTTTGCTCGGAGAGAGGTGAAGCTCTTGGGATTGTCCTGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC