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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatggttgctttgtaatatggatatggtttcttttttgattttgtgattgtgttctcaatttatctgtgaacaatccacattgaactcattgatctcaagATCCCAGTATTGTGTACCATGGAAAACTCTGTGATTGACAACAAGGATGGTGGTGTTAATGACGATGGTGTTCAAGTCACATGCTTTACAGAGGTTTCTG

Basic information

species Vitis vinifera
transcript Vv05s0020g00040.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122690455|gb|EC952954.1|EC952954
EST:     TGTCTCGGCTCTCAAATCTTCTACCGTGCTTTTTGATCAAGGCTTCG                         ATCCCAGTATTGTGTACCATGGAAAACTCTGTGATTGACAACAAGGATGGT
genomic: TGTCTCGGCTCTCAAATCTTCTACCGTGCTTTTTGATCAAGGCTTCGgtgagttatt ... tgatctcaagATCCCAGTATTGTGTACCATGGAAAACTCTGTGATTGACAACAAGGATGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattgtgttctcaatttatctgtgaacaatccacattgaactcattgatctcaagATCCCAGTATTGTGTACCATGGAAAACTCTGTGATTGACAACAAGGATGGTGGTGTTAATGACGATGGTGTTCAAGTCACATGCTTTACAGAGGTTTCTG
                                          cattgat  putative branch site (score: 4)
          tcaatttat  TA-rich tract