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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtgttttttaaaggccacacatgtatctatttttatgatttaaggtagatacattttgtaggagggagaaagatgttacacataaatatttaaatctggttggtattctttcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCAGTGCCCATGTGCGGGGCTGTCCTCAACACCATTAACATCAGGCTAGATG

Basic information

species Vitis vinifera
transcript Vv04s0079g00790.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0079g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os03g03790.1 (Oryza sativa), 3'ss of exon 1
gtaagtgtgttttttaaaggccacacatgtatctatttttatgatttaaggt-agatacatt-ttgtaggagggagaaagatgttacacat-aaatatttaaat--ctggttggtattc-----tttcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCAGTGCCCATGTGCGGGGCTGTCCTCAACACCATTAACATCAGGCTAGATG
||||||   |    |    || ||  || |    ||    ||    |||| | |||| | |    | | |  ||       | || |   | ||| |  |   |   || |||| ||       ||     || |||| || ||| |||| || ||  | || || ||||||||||||||||| || ||||| |||  |||||| || ||||||||||| ||||   |||| || |
gtaagtagatcgaatcctagctacgaatatgaacatac--atagcgtaagttcagattcgtagccggaagttggtttcgtttcttgcgtgtcaaacacgtgtgtgattgtttggaatctgtgtgttgtgtgtgtagGTGTCGGTTTTGGCGCCGAACGTGCCGGCAATGTACGAGATGCACTTCGCGGTGCCGATGGCCGGGGCGGTGCTCAACACCATCAACACGCGGCTCGACG

upper sequence: Vv04s0079g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G33110.1 (Glycine max), 3'ss of exon 1
gtaagtgtgttttttaaaggccacacatgtatctatttttatgatttaaggtagatacattttgtaggagggagaaagatgttacacataaatatttaaatctggttggtattctttcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCAGTGCCCATGTGCGGGGCTGTCCTCAACACCATTAACATCAGGCTAGATG
                 |   | |   | |||  |  | ||||||| | | || |   | |       | |   ||  || |     ||| ||||   ||| |  | |      |||   |  |||||||| || ||||| || || || || || ||||| |||||||| |||||||||||||||   || ||||| ||||||||||| ||||   | || ||||
--------------agcatttctcttttatatacacatatatgattcatgctaaa-gtactc-----aaagattaattatctggagtatacatatactaattttctgg------tttatgcaacagGTATCGGTGCTGGCCCCTAACATCCCCGCGATGTATGAGATGCATTTTGCAGTGCCCATGGCTGGTGCTGTTCTCAACACCATCAACACTCGTCTTGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71864040|gb|DT013095.1|DT013095
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71861471|gb|DT010526.1|DT010526
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71862454|gb|DT011509.1|DT011509
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71862187|gb|DT011242.1|DT011242
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71860170|gb|DT009225.1|DT009225
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71862611|gb|DT011666.1|DT011666
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71862227|gb|DT011282.1|DT011282
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71864741|gb|DT013796.1|DT013796
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71860816|gb|DT009871.1|DT009871
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71864655|gb|DT013710.1|DT013710
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71864820|gb|DT013875.1|DT013875
EST:     GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: GCCGCCTTGCCTCCTCTCTTCATCGTCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
EST: gi|71863759|gb|DT012814.1|DT012814
EST:     TCTCAACGTCGCCAAAAACGATGTT                         GTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA
genomic: TCTCAACGTTGCCAAAAACGATGTTgtaagtgtgt ... tcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagaaagatgttacacataaatatttaaatctggttggtattctttcccctgcagGTATCAGTTCTGGCTCCAAATATTCCAGCCATGTACGAGATGCACTTTGCAGTGCCCATGTGCGGGGCTGTCCTCAACACCATTAACATCAGGCTAGATG
                                      tattctttcccctgc  CT-rich tract
       atgttacacataaata  TA-rich tract