Sequence
atgc intronic sequence ATGC exonic sequence...agattacatatattaatgtctaatggtcatgtttgttttatgttccaaatataaggtttagtagtttgtaatattctgtttaaatgatgtttcttgccagGTTTTTATGCCAGATAGAGTGTTTCTCCTCCGGGGAAATCATGAATCTAAATATTGCACGTCTGTATATGGTTTTGAGAAAGAAGTAATGACCAAATATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0044g01770.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G004582_T05 (Zea mays), 3'ss of exon 3
agattacatatattaatgtcta-atggtcatgtttgttttatgttcca-aatataaggtttagtagtttgtaatattctgtttaaatgatgtttcttgccagGTTTTTATGCCAGATAGAGTGTTTCTCCTCCGGGGAAATCATGAATCTAAATATTGCACGTCTGTATATGGTTTTGAGAAAGAAGTAATGACCAAATATG
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tcctttgacattctaaaacttctatagaaatctccgttcaacttcaaacagtgtcaaacataaatggttgctaattaatggt--gttcttgctttctttcagGTGCTACTCCCAAACTGTGTGTTCCTTCTCCGGGGAAACCACGAATCCAAGTACTGCACGTCAGTATATGGTTTCGAGAAGGAGGTAATGACTAAATACA
upper sequence: Vv04s0044g01770.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G004582_T06 (Zea mays), 3'ss of exon 3
agattacatatattaatg-tctaatggtcatgtttgttttatgttcca-aatataaggtttagtagtttgtaatattctgtttaaatgatgtttcttgccagGTTTTTATGCCAGATAGAGTGTTTCTCCTCCGGGGAAATCATGAATCTAAATATTGCACGTCTGTATATGGTTTTGAGAAAGAAGTAATGACCAAATATG
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tcctttgacattctaaaacttctatagaaatctccgttcaacttcaaacagtgtcaaacataaatggttgctaattaatggt--gttcttgctttctttcagGTGCTACTCCCAAACTGTGTGTTCCTTCTCCGGGGAAACCACGAATCCAAGTACTGCACGTCAGTATATGGTTTCGAGAAGGAG----------------
upper sequence: Vv04s0044g01770.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G039359_T07 (Zea mays), 3'ss of exon 1
agattacatatattaatgtcta-atggtcatgtttgttttatgttcca-aatataaggtttagtagtttgtaatattctgtttaaatgatgtttcttgccagGTTTTTATGCCAGATAGAGTGTTTCTCCTCCGGGGAAATCATGAATCTAAATATTGCACGTCT-GTATATGGTTTTGAGAAAGAAGTAATGACCAAATATG
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tcctttgacattctaaaacttctatagaaatctccgttcaacttcaaacagtgtcaaacataaatggttgctaattaatggt--gttcttgctttctttcagGTGCTACTCCCAAACTGTGTGTTCCTTCTCCGGGGAAACCACGAATCCAAGTACTGCACGTCAAGTATATGGTTTCGAGAAGGAGGTAATGACTAAATAC-
upper sequence: Vv04s0044g01770.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G32830.1 (Glycine max), 3'ss of exon 1
agattacatatattaatgtctaatggtcatgtttgttttatgttccaaatataaggtttagtagttt--gtaatattc-tgtttaaatgat-gtttcttgccagGTTTTTATGCCAGATAGAGTGTTTCTCCTCCGGGGAAATCATGAATCTAAATATTGCACGTCTGTATATGGTTTTGAGAAAGAAGTAATGACCAAATATG
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--ttgaaagatttaattgcccgaaa--taggatcattgaggaatggggtaatatgtttttatactttttatgatatttatagtactataattgttttgtgtcagGTATTCATGCCACATAACATATATTTGCTACGAGGGAATCACGAATCAAAATACTGTACATCAGTTTATGGTTTTGAGAAAGAAGTAATGGTAAAGTATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71855159|gb|DT004214.1|DT004214EST: ATAGAGGCGCCTGGGGCCTTGAGACCTTTCTTCTCCTGCTCGCTTGGAAG GTTTTTATGCCAGATAGAGTGTTTCTCCTCCGGGGAAATCATGAATCTAAA
genomic: ATAGAGGCGCCTGGGGCCTTGAGACCTTTCTTCTCCTGCTCGCTTGGAAGgtatttctat ... ttcttgccagGTTTTTATGCCAGATAGAGTGTTTCTCCTCCGGGGAAATCATGAATCTAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaatataaggtttagtagtttgtaatattctgtttaaatgatgtttcttgccagGTTTTTATGCCAGATAGAGTGTTTCTCCTCCGGGGAAATCATGAATCTAAATATTGCACGTCTGTATATGGTTTTGAGAAAGAAGTAATGACCAAATATG
tttcttgcc CT-rich tract
tttgtaatattctgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agattacatatattaatgtctaatggtcatgtttgttttatgttccaaatataaggtttagtagtttgtaatattctgtttaaatgatgtttcttgccagGTTTTTATGCCAGATAGAGTGTTTCTCCTCCGGGGAAATCATGAATCTAAATATTGCACGTCTGTATATGGTTTTGAGAAAGAAGTAATGACCAAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - ggtcatg
- - - - - - - - - - - - - - - - - - - - - - ccaaata