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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaccatacaaatatggtgcattttgtaattacactagctagtttgtgctttcttacttgaagttattctgctttttggcagGTGGATTTATCAGAAATACTGTGACGCATTGAAGGAGCTGTCTCTAGGGATTATGCAACTCTTGGCAATTAGCTTGGATGTGGATAGTTCCTACTACAGG

Basic information

species Vitis vinifera
transcript Vv04s0044g01650.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110383966|gb|EC948375.1|EC948375
EST:     GTAGCTGATTATTTCAAAACTGCCTTAGGTGAAGACTTTGAACAGATAGG                         GTGGATTTATCAGAAATACTGTGACGCATTGAAGGAGCTGTCTCTAGGGAT
genomic: GTAGCTGATTATTTCAAAACTGCCTTAGGTGAAGACTTTGAACAGATAGGgtaagaccat ... tttttggcagGTGGATTTATCAGAAATACTGTGACGCATTGAAGGAGCTGTCTCTAGGGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattacactagctagtttgtgctttcttacttgaagttattctgctttttggcagGTGGATTTATCAGAAATACTGTGACGCATTGAAGGAGCTGTCTCTAGGGATTATGCAACTCTTGGCAATTAGCTTGGATGTGGATAGTTCCTACTACAGG
                       ttcttac  putative branch site (score: 2)
                                    ttattctgcttttt  putative PPT
                                 aagttatt  TA-rich tract