Sequence
atgc intronic sequence ATGC exonic sequence...tgaaatttgattttgtatgtgtgcgtgtcctgatttcatgtatggtttagtgtgtatatatgtggatatatgtatttatgtatgtattattttttctcagAAAGTGCAAAAGGCGCTGTTGCAATCAGATGTCCAATCTAAATCAGATAAAAGCCCTGTCACAGTGGCTGACTATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0044g01480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G26250.1 (Glycine max), 3'ss of exon 1
tgaaatttgattttgtatgtgtgcgtgtcctgatttcatgtatggtttagtgtgtatatatgtggatatatgtatttatgtatgtattatt------ttttctcagAAAGTGCAAAAGGCGCTGTTGCAATCAGATGTCCAATCTAAATCAGATAAAAGCCCTGTCACAGTGGCTGACTATG
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------ctttttttctaagtgctgcaacgatcaatgcctgaagaattgaatgaagaaaaaaatgcttatgggtactgattgattcttcgttgtgtggtttgtgcagAAAGTTCAGAAGGCTCTTCTGCAATCCGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG
upper sequence: Vv04s0044g01480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G26250.2 (Glycine max), 3'ss of exon 1
tgaaatttgattttgtatgtgtgcgtgtcctgatttcatgtatggtttagtgtgtatatatgtggatatatgtatttatgtatgtattattttttctcagAAAGTGCAAAAGGCGCTGTTGCAATCAGATGTCCAATCTAAATCAGATAAAAGCCCTGTCACAGTGGCTGACTATG
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------taagtgctgcaacgatcaatg-cctgaagaattgaatgaagaaaaaaatgcttatgggtactgattgattcttcgttgtgtggtttgtgc--agaaagttcagAAGGCTCTTCTGCAATCCGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG
upper sequence: Vv04s0044g01480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G09180.1 (Glycine max), 3'ss of exon 1
tgaaatttgattttgtatgtg-tgcgtgtcctgatttcatgtatggtttagtgtgtatatatgtggatatatgtatttatgtatgtattatt------ttttctcagAAAGTGCAAAAGGCGCTGTTGCAATCAGATGTCCAATCTAAATCAGATAAAAGCCCTGTCACAGTGGCTGACTATG
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-----ttctttttcaaaagtactgcgacgattaatgcc-tgaaaattaaacgaagaggaaatgctggtata-atactgattgattcttctttgtatggtttgtacagAAAGTACAGAAGGCTCTTCTGCAATCCGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG
upper sequence: Vv04s0044g01480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G63980.1 (Arabidopsis thaliana), 3'ss of exon 1
tgaaatttgattttgtatgtgtgcgtgtcctgatttcatgtatg-gtttagtgtgtatatatgtggatatatgtatttatgtatgtattattttt-tctcagAAAGTGCAAAAGGCGCTGTTGCAATCAGATGTCCAATCTAAATCAGATAAAAGCCCTGTCACAGTGGCTGACTATG
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-gggaatagattctagtgatata-gtgtaatggtcctctacatacgaagctcgtgtaaatctttgatcaaaatcttatctttgtgttttgggtttgtttcagAAAGTTCAAAAGGCTTTGTTGCAATCAGATGTGCAATCAAAATCTGATAAAAGTCCAGTGACCGTTGCTGATTATG
upper sequence: Vv04s0044g01480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G09290.1 (Arabidopsis thaliana), 3'ss of exon 1
tgaaatttgattttgtatgtgtgcgtgtcctgatttcatgtatggtttagtg--tgtatatatgtggatatatgtatttatgtatgtattat-tttttctcagAAAGTGCAAAAGGCGCTGTTGCAATCAGATGTCCAATCTAAATCAGATAAAAGCCCTGTCACAGTGGCTGACTATG
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--------------------gttagtaaccacat---atgtctaatttattgacaaaacttttactaatgacagttttttttcatgaactgtgtgttgatcagGAAGTGCAGAAGTCTCTGTTGCAATCAGATGTCCGGTCAAAATCTGATAAAAGTCCGGTTACAGCTGCTGATTATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttagtgtgtatatatgtggatatatgtatttatgtatgtattattttttctcagAAAGTGCAAAAGGCGCTGTTGCAATCAGATGTCCAATCTAAATCAGATAAAAGCCCTGTCACAGTGGCTGACTATG
tattattttttctc CT-rich tract
atatatgtatttatgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgaaatttgattttgtatgtgtgcgtgtcctgatttcatgtatggtttagtgtgtatatatgtggatatatgtatttatgtatgtattattttttctcagAAAGTGCAAAAGGCGCTGTTGCAATCAGATGTCCAATCTAAATCAGATAAAAGCCCTGTCACAGTGGCTGACTATG
- - - - - - -tgtatgt
- - - - - - - gtatgtg
- - - - - - - - - - -tgcgtgt
- - - - - - - - - - - - - - cctgatt
- - - - - - - - - - - - - - - - - -tcatgta