1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttggctaatcgatcggtttgattgaggagaagtagcttgattttgtttgtagtgatttcttcgtcccgatctggtatttttggtgtgatttattgtgagAGAG
species | Vitis vinifera |
transcript | Vv04s0044g00580.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|294965393|gb|GW837108.1|GW837108
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110703663|gb|EE080716.1|EE080716
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|37185758|gb|CF605111.1|CF605111
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161715877|gb|FC067456.1|FC067456
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|30297466|gb|CB974260.1|CB974260
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161718707|gb|FC066630.1|FC066630
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|351033564|gb|FQ447723.1|FQ447723
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110732373|gb|EE107605.1|EE107605
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161720901|gb|FC070998.1|FC070998
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161718238|gb|FC066957.1|FC066957
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|351014693|gb|FQ437893.1|FQ437893
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110721058|gb|EE097624.1|EE097624
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|349829797|gb|FQ422110.1|FQ422110
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110724889|gb|EE101112.1|EE101112
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110687074|gb|EE064164.1|EE064164
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161714150|gb|FC064415.1|FC064415
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110366393|gb|EC930285.1|EC930285
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161716586|gb|FC067172.1|FC067172
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110721193|gb|EE097911.1|EE097911
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCT-CGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110709158|gb|EE084373.1|EE084373
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|37184885|gb|CF604238.1|CF604238
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|27578609|gb|CB001304.1|CB001304
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161708078|gb|FC056482.1|FC056482
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161718593|gb|FC067914.1|FC067914
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110693092|gb|EE069021.1|EE069021
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110698021|gb|EE075559.1|EE075559
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110708736|gb|EE086617.1|EE086617
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110700776|gb|EE077727.1|EE077727
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|27579389|gb|CB002084.1|CB002084
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161718489|gb|FC067310.1|FC067310
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161719886|gb|FC069015.1|FC069015
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161712262|gb|FC061885.1|FC061885
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|37184908|gb|CF604261.1|CF604261
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|351014010|gb|FQ434162.1|FQ434162
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|37184922|gb|CF604275.1|CF604275
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110722642|gb|EE099048.1|EE099048
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161720100|gb|FC065464.1|FC065464
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|37184175|gb|CF603529.1|CF603529
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|37188829|gb|CF608178.1|CF608178
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110690418|gb|EE067510.1|EE067510
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110393093|gb|EC958006.1|EC958006
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161715776|gb|FC066180.1|FC066180
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161717624|gb|FC066903.1|FC066903
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161707977|gb|FC057784.1|FC057784
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110701484|gb|EE079104.1|EE079104
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110699170|gb|EE075932.1|EE075932
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110703875|gb|EE081193.1|EE081193
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|351024912|gb|FQ433329.1|FQ433329
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110698024|gb|EE075562.1|EE075562
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161720220|gb|FC070872.1|FC070872
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161715182|gb|FC065792.1|FC065792
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|351025029|gb|FQ433446.1|FQ433446
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|110699598|gb|EE076737.1|EE076737
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTTTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|37185169|gb|CF604522.1|CF604522
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161714410|gb|FC064421.1|FC064421
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AGEST: gi|161707105|gb|FC057295.1|FC057295
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
EST: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTT--- A-AG
genomic: TCCTCCTTCGCCTCCGATTCTCTCTGCTCTCTGTCTCCGCAGTCTTTAAGgtatgctttt ... ttattgtgagAGAG
gtttgtagtgatttcttcgtcccgatctggtatttttggtgtgatttattgtgagAGAG
tgatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggctaatcgatcggtttgattgaggagaagtagcttgattttgtttgtagtgatttcttcgtcccgatctggtatttttggtgtgatttattgtgagAGAG
- - - - - - - - - - - - -aggagaa
- - - - - - - - - - - - - - - - -tagcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgtg