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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatgtctttggttttccatttttctgcatgagttagatttcatctggggtttcttcaattattttctggagatgatgttttcttttcttgctttggtttttctgtttttcattggtttctcagAGCCCAGATGGAGATATCATAGACTGCGTTCATAAAAGAAAACAACCTGCTTTGGATCATCCTCTTCTCAAGAATCACAAGATTCAG

Basic information

species Vitis vinifera
transcript Vv04s0043g00560.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0043g00560.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G41280.1 (Glycine max), 3'ss of exon 1
------------gtatatatgtctttggttttccatttttctgcatgagt-tagatttcatctggggtttcttcaattattttctggagatgatgttttcttttc-ttgctttggtttttctgtttttcattggtttctcagAGCCCAGATGGAGATATCATAGACTGCGTTCATAAAAGAAAACAACCTGCTTTGGATCATCCTCTTCTCAAGAATCACAAGATTCAG
             || |||||| | ||  | || ||  ||    |||    |   |||| | |   |||| |  |  || |         |  |    | ||||| ||| |      | |    | || |||  | | |||||| |||||||| ||| ||||||| || || ||||||||||||||||| ||||| ||||| || ||| | ||||||||||||||||||
gtaattaatatgctaaatatgtgtatg--tgtcaatggttgaaaatgttcatgtttttccttttttgtttttctatataataatcatcattattagaatattttcattgataaatgatgttgaatcttaattattatttcagAGTCCAGATGGTGATCTCATAGATTGTGTCCATAAAAGAAAACAACCAGCTTTAGATCACCCCCTTTTAAAGAATCACAAGATTCAG

upper sequence: Vv04s0043g00560.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G36380.1 (Glycine max), 3'ss of exon 1
-----------------gtatatatgtctttggttttccatttttctgcatgagttagatttcatctggggtttcttcaattattttctgga-gatgatgttttcttttcttgctttg-------------gtttttctgtttttcattggtttctcagAGCCCAGATGGAGATATCATAGACTGCGTTCATAAAAGAAAACAACCTGCTTTGGATCATCCTCTTCTCAAGAATCACAAGATTCAG
                  |  || |    || ||  |  | ||||  || |  | |          || |||||  | |||       |  | | || | ||||| ||  ||  | |               || ||   | |   ||||   |  ||||| |||||||||||| | ||||| || ||||| |||||||||||||  ||||| ||||| || ||| | |||||||||||||| |||
gtaatattactgttaccattaatgttatatttgtactatagtttttagcgtacgctgatcagtggttgaggttt--taaatggccacataaatgttggttttttccttctttattatatgtaacagtaagtattctttgctgtcggattgtaattgcagAGTCCAGATGGAGATCTTATAGATTGTGTTCACAAAAGAAAACAACTGGCTTTAGATCACCCCCTTTTAAAGAATCACAAGATCCAG

upper sequence: Vv04s0043g00560.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G43900.1 (Glycine max), 3'ss of exon 3
------------------------------------gtatatatgtctttggttttccatt-tttctgcatgagttagatttcatctggggtttcttcaattattttctggagat---------gatgttttcttttcttgct--ttggtttttctgtttttcattggttt-ctcagAGCCCAGATGGAGATATCATAGACTGCGTTCATAAAAGAAAACAACCTGCTTTGGATCATCCTCTTCTCAAGAATCACAAGATTCAG
                                     |  | ||||   ||  | |  | | | | |  ||     | || |||| |    ||||||    ||| | ||    ||          || ||||| ||  |   |  |||    | |||  | | |||  ||   |||||| |||||||| ||| ||||||| || || ||||||||||||||||| ||||| ||||| || ||| | ||| |||||||||| |||
gtaattaatatgctaaatatgtgtatgtatcaatggttgaaaatgttaatgagtatagactatatatatatacaaaaaatgtcattttt--tttctttttctatatactaataatcatcattagaatattttcattgataagtacttgacgatgctgaatcttattatttcattcagAGTCCAGATGGTGATCTCATAGATTGTGTCCATAAAAGAAAACAACCAGCTTTAGATCACCCCCTTTTAAAGGATCACAAGATCCAG

upper sequence: Vv04s0043g00560.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G31140.1 (Glycine max), 3'ss of exon 1
--------------gtatatatgtctttggttttccatttttctgcatgagttagatttcatctggggtttcttcaattattttctggagatgatgttttcttttcttgctttggtttttctgt---ttttcattggtttctcagAGCCCAGATGGAGATATCATAGACTGCGTTCATAAAAGAAAACAACCTGCTTTGGATCATCCTCTTCTCAAGAATCACAAGATTCAG
               |  ||||   ||  ||  |  | |||||    |  |||          || | |||        |  |      | || | ||| |  |||||  ||   | |  | ||   | ||| || || |  ||||| |||||||||||| | ||||| ||  |||| |||||||||||||  ||||| ||||| || ||| | |||||||||||||| |||
gtaacattattactattaatattatttatgtactatagttttcattgtacgttgatcagtggttgagattttaatggccacata--aatgttggtttttgcccttctttattatatgtaacagtaagtattcttttgtattgcagAGTCCAGATGGAGATCTTATAGATTGTATTCACAAAAGAAAACAACTGGCTTTAGATCACCCCCTTTTAAAGAATCACAAGATCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagatgatgttttcttttcttgctttggtttttctgtttttcattggtttctcagAGCCCAGATGGAGATATCATAGACTGCGTTCATAAAAGAAAACAACCTGCTTTGGATCATCCTCTTCTCAAGAATCACAAGATTCAG
                                               tttctc  CT-rich tract
         ttttctttt  TA-rich tract