1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttggctgcggttctcgtctctgaaattctttcatttttcttctttcttcttgcttataaaattcttttgttttcctcAGTTTTCTCAGCAACCTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGATTGACGATGAGAAGAAGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGC
species | Vitis vinifera |
transcript | Vv04s0043g00440.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTTCTCATCGTCTTTGCTCC--G AGTTTTCTCAGCAACCTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGATEST: gi|71890464|gb|DT039519.1|DT039519
genomic: CTCTTCTCATCGTCTTTGCTCCGAGgttggctgcg ... tgttttcctcAGTTTTCTCAGCAACCTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGAT
EST: CGTCTTTGCTCC--G AGTTTTCTCATCAACCTAACAGAGGAGGAGTATGGCAGCCGTTGCCGTGAGEST: gi|351017700|gb|FQ436053.1|FQ436053
genomic: CGTCTTTGCTCCGAGgttggctgcg ... tgttttcctcAGTTTTCTCAGCAACCTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGAT
EST: ATCGTCTTTGCTCC--G AGTTTTCTCATCAACCTAACAGAGGAGGAGTATGGCAGCCGTTGCCGTGAGEST: gi|71873340|gb|DT022395.1|DT022395
genomic: ATCGTCTTTGCTCCGAGgttggctgcg ... tgttttcctcAGTTTTCTCAGCAACCTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGAT
EST: CGTCTTTGCTCC--G AGTTTTCTCATCAACCTAACAGAGGAGGAGTATGGCAGCCGTTGCCGTGAGEST: gi|77581790|gb|DV219850.1|DV219850
genomic: CGTCTTTGCTCCGAGgttggctgcg ... tgttttcctcAGTTTTCTCAGCAACCTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGAT
EST: TCTCATCGTCTTTGCTCC--G AGTTTTCTCATCAACCTAACAGAGGAGGAGTATGGCAGCCGTTGCCGTGAG
genomic: TCTCATCGTCTTTGCTCCGAGgttggctgcg ... tgttttcctcAGTTTTCTCAGCAACCTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGAT
aaattctttcatttttcttctttcttcttgcttataaaattcttttgttttcctcAGTTTTCTCAGCAACCTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGATTGACGATGAGAAGAAGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGC
ttcttttgttttcctc CT-rich tract
ttataaaattcttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggctgcggttctcgtctctgaaattctttcatttttcttctttcttcttgcttataaaattcttttgttttcctcAGTTTTCTCAGCAACCTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGATTGACGATGAGAAGAAGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA