Sequence
atgc intronic sequence ATGC exonic sequence...tagatgctgattagctctcagggtctttttggtcttcctaggagtagttgcttaatactaaacagccacatatgattttatgcttttactgttcctgtagGGTAGAGAGAGTCACATTGGTGACTGAGAAAGTAGCTACTGGGGTCCTCTCTGGAGTTGTGAAGGTTTCTGGATTCTTCACAGGTTCTGTGGCAAACTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g03670.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G23400.1 (Glycine max), 3'ss of exon 3
--tagat-gctg-attagctctcagggtctttttggtcttcctaggagtagttgcttaatactaaacagccacatatgattttatgcttttactgttcctgtagGGTAGAGAGAGTCACATTGGTGACTGAGAAAGTAGCTACTGGGGTCCTCTCTGGAGTTGTGAAGGTTTCTGGATTCTTCACAGGTTCTGTGGCAAACTCA
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tttaggtcgctgtattagtcctt---gttttttgtctgttagtctgtttgaacatgaacatttaaataactg-atattgtctttttggcttgatgcttatatagGGTTAAGAAAGTGACCAAAATGACAGAGAGTGTGGCAAATGGGGTTCTCACTGGGGTTGTGAAGGTCTCTGGATTTTTCACTAGTTCAGTGGCAAATTCA
upper sequence: Vv04s0023g03670.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G17840.1 (Arabidopsis thaliana), 3'ss of exon 1
tagatgctgattagctctcagggtctttttggtcttcctaggagtagttgcttaatactaaacagccacatatg-----attttatgcttttactgttcctgtagGGTAGAGAGAGTCACATTGGTGACTGAGAAAGTAGCTACTGGGGTCCTCTCTGGAGTTGTGAAGGTTTCTGGATTCTTCACAGGTTCTGTGGCAAACTCA
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--gagtgtaatttgagagctgagacgatatg-tgttcatcgtctc--tagcaaaatgacatatagttacgtgtattggtgtctaattgtgttgttgcctatgcagAGTGAAGAGGATGACCAAAATGACAGAGAGTGTAGCAAACAGCATACTGTCTGGAGTCCTTAAAGTTTCTGGATTCTTCACAAGTTCAGTGGCAAACACC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agttgcttaatactaaacagccacatatgattttatgcttttactgttcctgtagGGTAGAGAGAGTCACATTGGTGACTGAGAAAGTAGCTACTGGGGTCCTCTCTGGAGTTGTGAAGGTTTCTGGATTCTTCACAGGTTCTGTGGCAAACTCA
tactaaa putative branch site (score: 1)
cttttactgttcct putative PPT
acatatgattttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagatgctgattagctctcagggtctttttggtcttcctaggagtagttgcttaatactaaacagccacatatgattttatgcttttactgttcctgtagGGTAGAGAGAGTCACATTGGTGACTGAGAAAGTAGCTACTGGGGTCCTCTCTGGAGTTGTGAAGGTTTCTGGATTCTTCACAGGTTCTGTGGCAAACTCA
- gatgctg
- - - - - - agctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacata