Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cccattttggcattatgtttcatttggctttgattgatctcaggtcttatcctgataaatgcaggtcttaaacaaaagtactttgtaaatgttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATGCTCTTAAAGTTGGGGAGATTAGCGACATCGTGGAAACTGATAGTGGGGT

Basic information

species Vitis vinifera
transcript Vv04s0023g03190.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03190.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G24140.1 (Glycine max), 3'ss of exon 1
----cccattttggcattatgtttcatttggctttgattgatctcaggtcttatcctgataaatgcaggtcttaaacaaaagtactttgtaaatgttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATGCTCTTAAAGTTGGGGAGATTAGCGACATCGTGGAAACTGATAGTGGGGT
      | ||  |  |  ||   |   |    |   ||  || ||     || || | |  |||   |    | |||  || ||  ||       | | | |||| || |||||||| || |||||||| |||||||||||||||||||| | ||||||||||||||| || ||||| ||||| ||||| ||||| ||||| ||
gatctgctttcagttagcattcatagctgaagtgaaatgcatgtctaaatttttcataactaattttgtcaattaactgaaataactttct----tgggtgcagGTCCTTTTGGTCGTGGCCAGATGCAGAAGCCTTTTGAAGAAGCAACTTTTGCTCTTAAAGTTGGTGAAATTAGTGACATTGTGGATACTGACAGTGGAGT

upper sequence: Vv04s0023g03190.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G05560.1 (Glycine max), 3'ss of exon 1
----cccattttggcattatgtttcatttggctttgattgatctcaggtcttatcctgataaatgcaggtcttaaacaaaagtactttgtaaatgttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATGCTCTTAAAGTTGGGGAGATTAGCGACATCGTGGAAACTGATAGTGGGGT
      ||||| |  |  ||   |   |    |   ||  || || |   || || | |  |||   |    | |||  || ||  ||       | | | |||| || |||||||| || |||||||| |||||||||||||||||||| | |||||||||| |||| || || || ||||| ||||| ||||| || || ||
gatctacatttagttagcattcatttctgaagtgaaatacatgtctgaatttttcataactaattttgtcaatgaactgaaataactttct----tgggtgcagGTCCTTTTGGTCGTGGCCAGATGCAGAAGCCTTTTGAAGAAGCAACTTTTGCTCTTAAAATTGGTGAAATAAGTGACATTGTGGATACTGACAGCGGAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30126416|gb|CB911755.1|CB911755
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|34319646|gb|CF372400.1|CF372400
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|71868180|gb|DT017235.1|DT017235
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|32458148|gb|CD799322.1|CD799322
EST:     GCCAAGCGCGGCGGCGATCTCG                         GGCCATTTTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATA
genomic: GCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCA--TTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATA
EST: gi|30252559|gb|CB970110.1|CB970110
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|22009304|gb|BQ794338.1|BQ794338
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|77581252|gb|DV219553.1|DV219553
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110421529|gb|EC987827.1|EC987827
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110697614|gb|EE074754.1|EE074754
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|71874204|gb|DT023259.1|DT023259
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|26263181|gb|CA814244.1|CA814244
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110385440|gb|EC949965.1|EC949965
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|30299705|gb|CB976499.1|CB976499
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|30302885|gb|CB979679.1|CB979679
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110375349|gb|EC940328.1|EC940328
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|77588119|gb|DV223270.1|DV223270
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|37183574|gb|CF602928.1|CF602928
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|32457668|gb|CD798842.1|CD798842
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|71877494|gb|DT026549.1|DT026549
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|30136420|gb|CB921758.1|CB921758
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|30252114|gb|CB968753.1|CB968753
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|30252419|gb|CB969970.1|CB969970
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110423823|gb|EC990174.1|EC990174
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110419176|gb|EC985384.1|EC985384
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110711317|gb|EE087672.1|EE087672
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|30130280|gb|CB915619.1|CB915619
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|71878282|gb|DT027337.1|DT027337
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110379843|gb|EC945064.1|EC945064
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|34545632|gb|CF513864.1|CF513864
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110723194|gb|EE100224.1|EE100224
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|30135340|gb|CB920678.1|CB920678
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|294965670|gb|GW837269.1|GW837269
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110686086|gb|EE063371.1|EE063371
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110685801|gb|EE062840.1|EE062840
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110708470|gb|EE086047.1|EE086047
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|51989838|gb|CV179293.1|CV179293
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110416727|gb|EC982726.1|EC982726
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110698117|gb|EE075759.1|EE075759
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|71880537|gb|DT029592.1|DT029592
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|71880328|gb|DT029383.1|DT029383
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|30125699|gb|CB911038.1|CB911038
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|27585619|gb|CB008314.1|CB008314
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110688795|gb|EE067755.1|EE067755
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|33408706|gb|CF214333.1|CF214333
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|34545718|gb|CF513950.1|CF513950
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|34549344|gb|CF517576.1|CF517576
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|26259336|gb|CA810399.1|CA810399
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110387388|gb|EC952049.1|EC952049
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|30299630|gb|CB976424.1|CB976424
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|30129206|gb|CB914545.1|CB914545
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|30124876|gb|CB910215.1|CB910215
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|30302989|gb|CB979783.1|CB979783
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110386790|gb|EC951415.1|EC951415
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110703582|gb|EE080552.1|EE080552
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|30252500|gb|CB970051.1|CB970051
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|33408891|gb|CF214518.1|CF214518
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110712845|gb|EE088245.1|EE088245
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|30135281|gb|CB920619.1|CB920619
EST:     CTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110685537|gb|EE062345.1|EE062345
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|51989949|gb|CV179404.1|CV179404
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|71867526|gb|DT016581.1|DT016581
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110363021|gb|EC926587.1|EC926587
EST:     CGCTTCTCAAATCTCCGATTGCAGTTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|352791441|gb|FQ481020.1|FQ481020
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110384771|gb|EC949231.1|EC949231
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
EST: gi|110714857|gb|EE092242.1|EE092242
EST:     CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCG                         GGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG
genomic: CGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGgtcggttttt ... gttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatcctgataaatgcaggtcttaaacaaaagtactttgtaaatgttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATGCTCTTAAAGTTGGGGAGATTAGCGACATCGTGGAAACTGATAGTGGGGT
    tcctgat  putative branch site (score: 3)
                      ttaaacaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cccattttggcattatgtttcatttggctttgattgatctcaggtcttatcctgataaatgcaggtcttaaacaaaagtactttgtaaatgttgttacagGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATGCTCTTAAAGTTGGGGAGATTAGCGACATCGTGGAAACTGATAGTGGGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
cccattt
- - - - ggcatta
- - - - - - - - - - - - tggcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa