1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agctactgttctttctgaatttttttttttttttggttatgcttttaagcgcactttcatcaaatttgagatgcccttgtgctcttctttttggttgcagGATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGACTTCCTGATGGACCGATTTTTTTAAAGATATGTGGAGAAGCTTCATGCG
species | Vitis vinifera |
transcript | Vv04s0023g03020.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCACCGACGAACTCTGGTTCAATCAGACTGTCGATCACTTCTCCCCTTTG GATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGAEST: gi|161714295|gb|FC063541.1|FC063541
genomic: CCACCGACGAACTCTGGTTCAATCAGACTGTCGATCACTTCTCCCCTTTGgtatgtattt ... ttggttgcagGATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGA
EST: CCACCGACGAACTCTGGTTCAATCAGACTGTCGATCACTTCTCCCCTTTG GATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGAEST: gi|161716540|gb|FC065231.1|FC065231
genomic: CCACCGACGAACTCTGGTTCAATCAGACTGTCGATCACTTCTCCCCTTTGgtatgtattt ... ttggttgcagGATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGA
EST: CCACCGACGAACTCTGGTTCAATCAGACTGTCGATCACTTCTCCCCTTTG GATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGAEST: gi|110703482|gb|EE080367.1|EE080367
genomic: CCACCGACGAACTCTGGTTCAATCAGACTGTCGATCACTTCTCCCCTTTGgtatgtattt ... ttggttgcagGATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGA
EST: CCACCGACGAACTCTGGTTCAATCAGACTGTCGATCACTTCTCCCCTTTG GATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGAEST: gi|161714750|gb|FC063922.1|FC063922
genomic: CCACCGACGAACTCTGGTTCAATCAGACTGTCGATCACTTCTCCCCTTTGgtatgtattt ... ttggttgcagGATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGA
EST: CCACCGACGAACTCTGGTTCAATCAGACTGTCGATCACTTCTCCCCTTTG GATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGAEST: gi|110719340|gb|EE097205.1|EE097205
genomic: CCACCGACGAACTCTGGTTCAATCAGACTGTCGATCACTTCTCCCCTTTGgtatgtattt ... ttggttgcagGATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGA
EST: CCACCGACGAACTCTGGTTCAATCAGACTGTCGATCACTTCTCCCCTTTG GATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGAEST: gi|110367557|gb|EC931495.1|EC931495
genomic: CCACCGACGAACTCTGGTTCAATCAGACTGTCGATCACTTCTCCCCTTTGgtatgtattt ... ttggttgcagGATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGA
EST: CCACCGACGAACTCTGGTTCAATCAGACTGTCGATCACTTCTCCCCTTTG GATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGA
genomic: CCACCGACGAACTCTGGTTCAATCAGACTGTCGATCACTTCTCCCCTTTGgtatgtattt ... ttggttgcagGATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGA
taagcgcactttcatcaaatttgagatgcccttgtgctcttctttttggttgcagGATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGACTTCCTGATGGACCGATTTTTTTAAAGATATGTGGAGAAGCTTCATGCG
tgcccttgtgctcttc CT-rich tract
atcaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctactgttctttctgaatttttttttttttttggttatgcttttaagcgcactttcatcaaatttgagatgcccttgtgctcttctttttggttgcagGATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGACTTCCTGATGGACCGATTTTTTTAAAGATATGTGGAGAAGCTTCATGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- ctactgt
- - - - - ctttctg
- - - - - - - - - - - - - - - - - -gttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaat