Sequence
atgc intronic sequence ATGC exonic sequencegtaaggatgaaactcacatacaacaaattttgccatctttcacgcttaagaacattttccagaattcaatttctactattgcgagtttcttacttgcaacctgataaaaagagccacctgttctattctaggttttgacaagtcgatgtgatattatatatttcagGACGTTATGTTCGGTGGTACAGAGACTGTGGCGTCTGCAATAGAGTGGGCCATGGCAGAGATGATGAAAAGCCCAGAAGATCTCAAGAAAGTTCAACAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02900.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G100158_T01 (Zea mays), 3'ss of exon 1
gtaaggatgaaactcacatacaacaaattttgccatctttcacgcttaagaacattttccagaattcaatttctactattgcga-gtttcttactt-gcaacctgataaaaagagccacctgttctattctaggttttgacaagtcgatgtgatattatatatttcagGACGTTATGTTCGGTGGTACAGAGACTGTGGCGTCTGCAATAGAGTGGGCCATGGCAGAGATGATGAAAAGCCCAGAAGATCTCAAGAAAGTTCAACAGG
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----------------------------------------------------------gggtaatatgtacctcaccatcgcgtcgttatgtattttgttgttttttatgagcagtcaaa-gctgtaaactaa-taatgatgtatggacgccgcatg--------cagGACGTGATGTTCGGCGGGACGGAGACGGTGGCGTCGGCGATCGAGTGGGCCATGGCGGAGATGATGCACAGCCCCGACGACCTGCGCCGGGTGCAGCAGG
upper sequence: Vv04s0023g02900.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G07850.1 (Glycine max), 3'ss of exon 1
gtaaggatgaaactcacatacaacaaattttgccatctttcacgcttaagaacattttccagaattcaatttctactattgcgagtttcttacttgcaacctgataaaaagagccacctgttctattctaggttttgacaagtcgatgtgatattatatatttcagGACGTTATGTTCGGTGGTACAGAGACTGTGGCGTCTGCAATAGAGTGGGCCATGGCAGAGATGATGAAAAGCCCAGAAGATCTCAAGAAAGTTCAACAGG
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----------------------------------------------------------------tgtgccctatgaaggtggtaagtaaataaa-gaaaattgatatcggtgatgattgtttcatttgtttgtggtg-tgtgttaatattattacactttacacagGACGTGATGTTCGGAGGCACGGAAACGGTGGCGTCAGCAATCGAGTGGGTCATGTCGGAGCTGATGAGAAGCCCAGAAGACCAAAAGCGGGTCCAACAAG
upper sequence: Vv04s0023g02900.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G02150.1 (Glycine max), 3'ss of exon 2
gtaaggatgaaactcacatacaacaaattttgccatctttcacgcttaagaacattttccagaattcaatttctactattgcgagtttcttacttgcaacctgataaaaagagccacctgttctattctaggttttgacaagtcgatgtgatattatatatttc--agGACGTTATGTTCGGTGGTACAGAGACTGTGGCGTCTGCAATAGAGTGGGCCATGGCAGAGATGATGAAAAGCCCAGAAGATCTCAAGAAAGTTCAACAGG
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----------------------------------------------------------------ttcaatattgtgtcgtatgaaggtggtaagtaaa---taaagaaaattgatatcggtgatgattgtttgtttgtggtgtgcgt-taacattacaatttacacagGACGTGATGTTCGGAGGCACGGAAACGGTAGCGTCAGCGATCGAGTGGGCCATGGCGGAGCTCATGAGAAGCCCAGAAGATCAAAAGCGGGTCCAACAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33409672|gb|CF215299.1|CF215299EST: TACAGAACGCCATCGAACTCACCAGAGATAACATTAAAGCTATCATCATG GACGTTATGTTCGGTGGTACAGAGACTGTGGCGTCTGCAATAGAGTGGGCC
genomic: TACAGAACGCCATCGAACTCACCAGAGATAACATTAAAGCTATCATCATGgtaaggatga ... tatatttcagGACGTTATGTTCGGTGGTACAGAGACTGTGGCGTCTGCAATAGAGTGGGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agccacctgttctattctaggttttgacaagtcgatgtgatattatatatttcagGACGTTATGTTCGGTGGTACAGAGACTGTGGCGTCTGCAATAGAGTGGGCCATGGCAGAGATGATGAAAAGCCCAGAAGATCTCAAGAAAGTTCAACAGG
ttttgac putative branch site (score: 3)
atgtgatattatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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gtaaggatgaaactcacatacaacaaattttgccatctttcacgcttaagaacattttccagaattcaatttctactattgcgagtttcttacttgcaacctgataaaaagagccacctgttctattctaggttttgacaagtcgatgtgatattatatatttcagGACGTTATGTTCGGTGGTACAGAGACTGTGGCGTCTGCAATAGAGTGGGCCATGGCAGAGATGATGAAAAGCCCAGAAGATCTCAAGAAAGTTCAACAGG
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