Sequence
atgc intronic sequence ATGC exonic sequence...agctaagaagtgtttttcattacttggatatctatgagattcaatctttgtttttgttttctaaagttttttcgggttgtcttatttttcttaatcctagGAGATTCATGCACCAAGGGCTCAATTAGAAGCTGTAAAGTATGATGTCATAAAATACTGCATAAGTACCCTTGTTTCTATTTCAGCTATGGAGGTTGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02670.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os06g49890.1 (Oryza sativa), 3'ss of exon 6
agctaagaagtgtttttcattacttggatatctatgagattcaatctttgtttttgttttctaaagttttttcggg--ttgtcttattt-ttcttaatcctagGAGATTCATGCACCAAGGGCTCAATTAGAAGCTGTAAAGTATGATGTCATAAAATACTGCATAAGTACCCTTGTTTCTATTTCAGCTATGGAGGTTGCTG
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------------------gtgagtaaagtggccttcatgtgtgggctctgttatctcactgtcgggcattaacagggtttgtctgatttgctactgttggcagGAAATTCACTCACTGAAAGCCCAGCTCGAGGCAGCAAAGTATGATGTCATCAAGTACTGCATAGGTACCATTGTTTCGATATCAGCTGTTGGACTCGCCG
upper sequence: Vv04s0023g02670.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G17170.1 (Glycine max), 3'ss of exon 7
-agctaagaagtgtttttcattacttggatat--ctatgagattcaatctttgtttttgttttctaaagttttttcgggttgtcttatttttcttaatcctagGAGATTCATGCACCAAGGGCTCAATTAGAAGCTGTAAAGTATGATGTCATAAAATACTGCATAAGTACCCTTGTTTCTATTTCAGCTATGGAGGTTGCTG
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tatgaaacaagccttatgtgacatttagaagttgttatttcatcccatggaaacttg-gctatttgcattttaaacaccctttgctataattcatattc--agGAGATCCATTCTTTAAGAGCACAACTGGAAGCAGCCAAATATGATGTCATAAAATACTGCATAGGAACACTTGTTTCGATCTCTGCTGTTGGTCTTGCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttgtttttgttttctaaagttttttcgggttgtcttatttttcttaatcctagGAGATTCATGCACCAAGGGCTCAATTAGAAGCTGTAAAGTATGATGTCATAAAATACTGCATAAGTACCCTTGTTTCTATTTCAGCTATGGAGGTTGCTG
ttgtcttatttttctt CT-rich tract
tttttgttttctaaag TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agctaagaagtgtttttcattacttggatatctatgagattcaatctttgtttttgttttctaaagttttttcgggttgtcttatttttcttaatcctagGAGATTCATGCACCAAGGGCTCAATTAGAAGCTGTAAAGTATGATGTCATAAAATACTGCATAAGTACCCTTGTTTCTATTTCAGCTATGGAGGTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - tacttgg
- - - - - - - - - - - - - - - -ctatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggttgt