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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctctacctctctattcttttcttctctctctctctctctctctctctctctttaaaactgtttggtttgtgcaatttgacaagGTGGTTGTGGTAGGAGCTGACTGGGGAGCTGTAGCTGCATGGCATCTCAGTCTGTTCAGGCCTGATAGAGTTAAGGGTTTGGTATGTCTTTGTGTTCCAT

Basic information

species Vitis vinifera
transcript Vv04s0023g02610.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161706381|gb|FC056759.1|FC056759
EST:     ATCTTGTTGGCGACATCATCGGCCTTATCGACCATTTTGGTGAACAAAAG                         GTGGTTGTGGTA
genomic: ATCTTGTTGGCGACATCATCGGCCTTATCGACCATTTTGGTGAACAAAAGgtcctctacc ... atttgacaagGTGGTTGTGGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctctctctctctctctctctttaaaactgtttggtttgtgcaatttgacaagGTGGTTGTGGTAGGAGCTGACTGGGGAGCTGTAGCTGCATGGCATCTCAGTCTGTTCAGGCCTGATAGAGTTAAGGGTTTGGTATGTCTTTGTGTTCCAT
                    tctttaaaa  TA-rich tract