Sequence
atgc intronic sequence ATGC exonic sequence...cccatgcacttggatgttttgtctttttatcatgcaggtatcatgtactgccgttcttctaaaaagttttcaatgacaaagttccactttaatggtgcagAAAAAAGTAATATCCTTGACAAAGCCCATAATCGAGGAAGCCATAACAAATCTTTACTGCAACAAATTTCCGACCAGCCTATGCATCGCAGACTTGGGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02290.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G24810.1 (Glycine max), 3'ss of exon 1
---cccatgcacttggatgttttgtctttttatcatgcaggtatcatgtactgccgttcttctaaaaagttttcaatgacaa-agttccactttaatggtgcagAAAAAAGTAATATCCTTGACAAAGCCCATAATCGAGGAAGCCATAACAAATCTTTACTGCAACAAATTTCCGACCAGCCTATGCATCGCAGACTTGGGAT
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tttcaaacatgtgtaaaagataaaagacagtaacacatgaatgtagtacaatatatgcttattactaattattcagtgtcattggttataactta----tacagGAAAAGGTGATTTGTTTGACAAAGCCCATAAGAGAGGAAGCCATAACAAGCCTCTATTGCAACACCGTCCCCAGAAGCTTGGCGGTTGCAGATTTGGGTT
upper sequence: Vv04s0023g02290.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G24820.1 (Glycine max), 3'ss of exon 1
----cccatgcacttggatgttttgtctttttatcatgcaggtatcatgtactgccgttcttctaaaaagttttcaatgacaa-agttccactttaatggtgcagAAAAAAGTAATATCCTTGACAAAGCCCATAATCGAGGAAGCCATAACAAATCTTTACTGCAACAAATTTCCGACCAGCCTATGCATCGCAGACTTGGGAT
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caatttcaaacatgtgtaaaaggtaaaagacagtaacacatgaatgtagtacaat-atatgattactaactattcagtgtcattggttataactta----tacagGAAAAGGTGATTTGTTTGACAAAGCCCATAAGAGAGGAAGCCATAACAAGCCTCTATTGCAACACCGTCCCCAGAAGCTTGGCGGTTGCAGATTTGGGTT
upper sequence: Vv04s0023g02290.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G24800.1 (Glycine max), 3'ss of exon 1
---cccatgcacttggatgttttgtctttttatcatgcaggtatcatgtactgccgttcttctaaaaagttttcaatgacaaagttccactttaa-tggtgcagAAAAAAGTAATATCCTTGACAAAGCCCATAATCGAGGAAGCCATAACAAATCTTTACTGCAACAAATTTCCGACCAGCCTATGCATCGCAGACTTGGGAT
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tttcaaacatgtgtaaaagataaaagacagtaacacatgaatgtagtacaatatatgcttattactaattattcagtgtca----ttgattataacttatacagCAAAAGGTGATTTGTTTGACAAAGCCCATAAGAGAGGAAGCCATAACAAGCCTCTATTGCAACACCGTCCCCAGAAGCTTGGCGGTTGCAGATTTGGGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110698251|gb|EE075586.1|EE075586EST: TGAATGGAGGCCATGGGGATACCAGTTACGCAAAAAACTCATTAGTTCAG AAAAAAGTAATATCCTTGACAAAGCCCACAATCGAGGAAGCCATAACAAAT
genomic: TGAAGGGAGGAAATGGGGATACCAGTTACGCAAAAAACTCATTAGTTCAGgtgtgtctct ... aatggtgcagAAAAAAGTAATATCCTTGACAAAGCCCATAATCGAGGAAGCCATAACAAAT
EST:
gi|294965607|gb|GW837206.1|GW837206EST: TGAAGGGAGGAAATGGGGATACCAGTTACGCAAAAAACTCATTAGTTCAG AAAAAAGTAATATCCTTGACAAAGCCCACAATCGAGGAAGCCATAACAAAT
genomic: TGAAGGGAGGAAATGGGGATACCAGTTACGCAAAAAACTCATTAGTTCAGgtgtgtctct ... aatggtgcagAAAAAAGTAATATCCTTGACAAAGCCCATAATCGAGGAAGCCATAACAAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactgccgttcttctaaaaagttttcaatgacaaagttccactttaatggtgcagAAAAAAGTAATATCCTTGACAAAGCCCATAATCGAGGAAGCCATAACAAATCTTTACTGCAACAAATTTCCGACCAGCCTATGCATCGCAGACTTGGGAT
taaaaagttttcaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cccatgcacttggatgttttgtctttttatcatgcaggtatcatgtactgccgttcttctaaaaagttttcaatgacaaagttccactttaatggtgcagAAAAAAGTAATATCCTTGACAAAGCCCATAATCGAGGAAGCCATAACAAATCTTTACTGCAACAAATTTCCGACCAGCCTATGCATCGCAGACTTGGGAT
-ccatgca
- - - - - tggatgt
- - - - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - - -catgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaag