1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctttatataaacagaaacaaatggaagtcataattggtttcaatgcattgaagctggaatttgatcatacaatgcacttatgttgtttccttatgtatagGACTCCAGCTGAAACTGGATCTCTGTCAGAAGAGTCAGATTATTCTGGGAAAAATGAATCCATGTCATATGGAGATGCTCACCAATCATTTGATGATGGT
species | Vitis vinifera |
transcript | Vv04s0023g02070.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGTTGCTTGGGCAGTCTAAGGATGGGGATGATTCGTCCGAGGAAGCTTG GACTCCAGCTGAAACTGGATCTCTGTCAGAAGAGTCAGATTATTCTGGGAA
genomic: GAGTTGCTTGGGCAGTCTAAGGATGGGGATGATTCGTCCGAGGAAGCTTGgtatgttgat ... ttatgtatagGACTCCAGCTGAAACTGGATCTCTGTCAGAAGAGTCAGATTATTCTGGGAA
cattgaagctggaatttgatcatacaatgcacttatgttgtttccttatgtatagGACTCCAGCTGAAACTGGATCTCTGTCAGAAGAGTCAGATTATTCTGGGAAAAATGAATCCATGTCATATGGAGATGCTCACCAATCATTTGATGATGGT
atttgat putative branch site (score: 5)
ttgtttcctt putative PPT
ttatgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttatataaacagaaacaaatggaagtcataattggtttcaatgcattgaagctggaatttgatcatacaatgcacttatgttgtttccttatgtatagGACTCCAGCTGAAACTGGATCTCTGTCAGAAGAGTCAGATTATTCTGGGAAAAATGAATCCATGTCATATGGAGATGCTCACCAATCATTTGATGATGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - ataaaca
- - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - caatgca
- - - - - - - - - - - - - - - - - - - - - - - - tgaagct