Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110385013|gb|EC949492.1|EC949492EST: ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
EST:
gi|110687675|gb|EE065355.1|EE065355EST: ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
EST:
gi|110384604|gb|EC949054.1|EC949054EST: ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
EST:
gi|110383055|gb|EC947403.1|EC947403EST: ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
EST:
gi|110731869|gb|EE106660.1|EE106660EST: ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
EST:
gi|71890516|gb|DT039571.1|DT039571EST: ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
EST:
gi|110369800|gb|EC933969.1|EC933969EST: ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
EST:
gi|110359986|gb|EC922427.1|EC922427EST: ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
EST:
gi|110708970|gb|EE084031.1|EE084031EST: ATATTTCCGACGACCTCGACTACCACATCCACGACGATCTCGATGTTCTG GAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
genomic: ATATTTCCGACGACCTCGACTCCCACATCCACGACGATCTCGATGTTCTGgtctgtttct ... gtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcaaatgtgagggacagtgaggggttttgtgatcggtggatttttgtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACCAACAGCCGGCGGAGCAGATTGCCGAGATTCTGGCAGGAGGCATTCGAGG
tttttgt CT-rich tract
atttttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctgtttctttcgctttctttctgtttgtacacctgagttttggcattggatcttggtgcaaatgtgagggacagtgaggggttttgtgatcggtggatttttgtggaaacagGAAATGGAGGAGAGGGAGAAGGTGGTGAAGCACATGTGGGATGTGTACACCAACAGCCGGCGGAGCAGATTGCCGAGATTCTGGCAGGAGGCATTCGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT