1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttggagatgcaaaattttgatttcttttcttttttccttcatttactgaataattaaaaagtttttgttgtttttcttatgtctggtctgattgatatagGCTCTACTTTGCTAAAATCGGGATTGGAACTCCATCAAAGGACTATTACGTGCAAGTTGATACAGGAAGTGACATATTATGGGTTAATTGTGCTGGATGT
species | Vitis vinifera |
transcript | Vv04s0023g00730.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGGCTGTGGATCTACCTTTGGGTGGCAATGGTCATCCTTCCGAAGCTGG GCTCTACTTTGCTAAAATCGGGATTGGAACTCCATCAAAGGACTATTACGTEST: gi|349820946|gb|FQ408654.1|FQ408654
genomic: TCGGCTGTGGATCTACCTTTGGGTGGCAATGGTCATCCTTCCGAAGCTGGgtctgttttt ... attgatatagGCTCTACTTTGCTAAAATCGGGATTGGAACTCCATCAAAGGACTATTACGT
EST: TCGGCTGTGGATCTACCTTTGGGTGGCAATGGTCATCCTTCCGAAGCTGG GCTCTACTTTGCTAAAATCGGGATTGGAACTCCATCAAAGGACTATTACGTEST: gi|351042013|gb|FQ456223.1|FQ456223
genomic: TCGGCTGTGGATCTACCTTTGGGTGGCAATGGTCATCCTTCCGAAGCTGGgtctgttttt ... attgatatagGCTCTACTTTGCTAAAATCGGGATTGGAACTCCATCAAAGGACTATTACGT
EST: TCGGCTGTGGATCTACCTTTGGGTGGCAATGGTCATCCTTCCGAAGCTGG GCTCTACTTTGCTAAAATCGGGATTGGAACTCCATCAAAGGACTATTACGTEST: gi|351025817|gb|FQ427829.1|FQ427829
genomic: TCGGCTGTGGATCTACCTTTGGGTGGCAATGGTCATCCTTCCGAAGCTGGgtctgttttt ... attgatatagGCTCTACTTTGCTAAAATCGGGATTGGAACTCCATCAAAGGACTATTACGT
EST: TCGGCTGTGGATCTACCTTTGGGTGGCAATGGTCATCCTTCCGAAGCTGG GCTCTACTTTGCTAAAATCGGGATTGGAACTCCATCAAAGGACTATTACGTEST: gi|349819195|gb|FQ412089.1|FQ412089
genomic: TCGGCTGTGGATCTACCTTTGGGTGGCAATGGTCATCCTTCCGAAGCTGGgtctgttttt ... attgatatagGCTCTACTTTGCTAAAATCGGGATTGGAACTCCATCAAAGGACTATTACGT
EST: TCGGCTGTGGATCTACCTTTGGGTGGCAATGGTCATCCTTCCGAAGCTGG GCTCTACTTTGCTAAAATCGGGATTGGAACTCCATCAAAGGACTATTACGT
genomic: TCGGCTGTGGATCTACCTTTGGGTGGCAATGGTCATCCTTCCGAAGCTGGgtctgttttt ... attgatatagGCTCTACTTTGCTAAAATCGGGATTGGAACTCCATCAAAGGACTATTACGT
ctgaataattaaaaagtttttgttgtttttcttatgtctggtctgattgatatagGCTCTACTTTGCTAAAATCGGGATTGGAACTCCATCAAAGGACTATTACGTGCAAGTTGATACAGGAAGTGACATATTATGGGTTAATTGTGCTGGATGT
gattgat putative branch site (score: 4)
taattaaaaagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggagatgcaaaattttgatttcttttcttttttccttcatttactgaataattaaaaagtttttgttgtttttcttatgtctggtctgattgatatagGCTCTACTTTGCTAAAATCGGGATTGGAACTCCATCAAAGGACTATTACGTGCAAGTTGATACAGGAAGTGACATATTATGGGTTAATTGTGCTGGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - -gatgcaa
- - - - - - - - - - - - - - - - - -ccttcat
- - - - - - - - - - - - - - - - - - - - - - - - - -aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctgg