Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctattccaaacctattaattaggttctctgtttagcaatacaggaagcctatgtttcttcctagttattgtaacacttctttctttctgacccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT

Basic information

species Vitis vinifera
transcript Vv04s0023g00600.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g00600.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G47770.1 (Glycine max), 3'ss of exon 1
ctattccaaacctattaattaggttctctgt-ttagcaatacaggaagcctatgtttcttcctagttattgtaacacttctttctttctgacccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT-
 | ||  | |    ||  |||   |   ||| || |||||  |  |   || | ||  | ||| |  |||||||   || ||  |||  || | | | |||||| ||| |||||||||||||||| ||| | |||||||||||| |||||||||||| 
ttcttggataaggcttctttaaagtgagtgtgtttgcaatgtattatttcttttttcttgccttga-attgtaattgtt-ttggttttggaacttctgcagaTGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCCAAATACAATTG

upper sequence: Vv04s0023g00600.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G38550.1 (Glycine max), 3'ss of exon 1
ctattccaaacctattaattaggttctctgtttagcaatacaggaagcctatgttt------cttcctagttattgtaacacttctttctttctgacccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT
     |   | ||   | | |  |||  |  ||   | |         || | |||      ||| |  |  ||||||||  || ||  |||  || | | | |||||| ||| |||||||||||||||| ||| | |||||||||||| | ||||||||||
-----ctgtaactggaagtgactttcctttctttaaagtgtgtttgtactgtatttttttatcttgcctggaattgtaactgtt-ttggttttggaacttctgcagATGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCAAAATACAATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71878369|gb|DT027424.1|DT027424
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|71856011|gb|DT005066.1|DT005066
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|110361442|gb|EC924912.1|EC924912
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|110724888|gb|EE101111.1|EE101111
EST:     GTTGATGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|71857088|gb|DT006143.1|DT006143
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|349811100|gb|FQ406088.1|FQ406088
EST:     GTTGATGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|349827772|gb|FQ422640.1|FQ422640
EST:     GTTGATGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|351018393|gb|FQ439205.1|FQ439205
EST:     GTTGACGCCGGCATGGACGCTGTTCGGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|161708900|gb|FC059646.1|FC059646
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|110691547|gb|EE069777.1|EE069777
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|71858445|gb|DT007500.1|DT007500
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|161714509|gb|FC062959.1|FC062959
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|71858250|gb|DT007305.1|DT007305
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|351030753|gb|FQ438591.1|FQ438591
EST:     GTTGATGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|351016449|gb|FQ423876.1|FQ423876
EST:     GTTGATGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|351014219|gb|FQ434808.1|FQ434808
EST:     GTTGACGCTGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|110390835|gb|EC955766.1|EC955766
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|349816150|gb|FQ403646.1|FQ403646
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|349821590|gb|FQ408149.1|FQ408149
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|110383561|gb|EC947940.1|EC947940
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|27755317|gb|CB036072.1|CB036072
EST:     GTTGATGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|110721162|gb|EE097848.1|EE097848
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|110730975|gb|EE108667.1|EE108667
EST:     GTTGATGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|161714485|gb|FC064460.1|FC064460
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|349833009|gb|FQ416387.1|FQ416387
EST:     GTTGATGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|110384862|gb|EC949328.1|EC949328
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|351031443|gb|FQ446646.1|FQ446646
EST:     GTTGATGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|110390904|gb|EC955847.1|EC955847
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|110409935|gb|EC975610.1|EC975610
EST:     ATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: ATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|351017045|gb|FQ424472.1|FQ424472
EST:     GTTGATGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|352794136|gb|FQ479378.1|FQ479378
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|71859775|gb|DT008830.1|DT008830
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|110687512|gb|EE065008.1|EE065008
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|71863235|gb|DT012290.1|DT012290
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|161711292|gb|FC060367.1|FC060367
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|110689856|gb|EE066444.1|EE066444
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|26264645|gb|CA815708.1|CA815708
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|37190678|gb|CF610027.1|CF610027
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|351049295|gb|FQ429038.1|FQ429038
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|110730593|gb|EE107853.1|EE107853
EST:     GTTGATGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|110384180|gb|EC948599.1|EC948599
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|161717400|gb|FC068871.1|FC068871
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGCTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|161713558|gb|FC064081.1|FC064081
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|349825950|gb|FQ415755.1|FQ415755
EST:     GTTGATGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|161720991|gb|FC070700.1|FC070700
EST:     ACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: ACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|77580614|gb|DV219211.1|DV219211
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|71864567|gb|DT013622.1|DT013622
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|30305248|gb|CB982042.1|CB982042
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|351024079|gb|FQ423502.1|FQ423502
EST:     GTTGATGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|110726293|gb|EE101950.1|EE101950
EST:     GTTGATGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|71873106|gb|DT022161.1|DT022161
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|30321480|gb|CD004742.1|CD004742
EST:     GTTGATGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGATAATGATCGGATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
EST: gi|351029622|gb|FQ427462.1|FQ427462
EST:     GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGA                         ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA
genomic: GTTGACGCCGGCATGGACGCTGTTCAGCGCCGCCTCATGTTCGAGGACGAgtgagtcact ... cccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcctatgtttcttcctagttattgtaacacttctttctttctgacccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT
                                       ttctgac  putative branch site (score: 2)
                            cacttctttctttctg  CT-rich tract
                   ttattgtaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctattccaaacctattaattaggttctctgtttagcaatacaggaagcctatgtttcttcctagttattgtaacacttctttctttctgacccttttcagATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - -ccaaacc
- - - - - - - - - - - - - - - - - - - -acaggaa
- - - - - - - - - - - - - - - - - - - - - - - -cctatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttcc