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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctctctttccatttttctctatatattcccaatttctacgatttttcaccctaccatttctgtatatatttcgtgtagATCGGCTTCAAATGGGTGAGGTGGTCTCCACGATTCCAA

Basic information

species Vitis vinifera
transcript Vv04s0008g07360.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30137308|gb|CB922646.1|CB922646
EST:     TCGAATTCTCGTTCTCGGCCTAGACAATGCTGGAAAAACCACTATTCTCT                         ATCGGCTTCAAATGGGTGAGGTGGTCTCCACGATTCCAA
genomic: TCGAATTCTCGTTCTCGGCCTAGACAATGCTGGAAAAACCACTATTCTCTgtattctctc ... tttcgtgtagATCGGCTTCAAATGGGTGAGGTGGTCTCCACGATTCCAA
EST: gi|33406636|gb|CF212263.1|CF212263
EST:     TCGAATTCTCGTTCTCGGCCTAGACAATGCTGGAAAAACCACTATTCTCT                         ATCGGCTTCAAATGGGTGAGGTGGTCTCCACGATTCCAA
genomic: TCGAATTCTCGTTCTCGGCCTAGACAATGCTGGAAAAACCACTATTCTCTgtattctctc ... tttcgtgtagATCGGCTTCAAATGGGTGAGGTGGTCTCCACGATTCCAA
EST: gi|30126854|gb|CB912193.1|CB912193
EST:     TCGAATTCTCGTTCTCGGCCTAGACAATGCTGGAAAAACCACTATTCTCT                         ATCGGCTTCAAATGGGTGAGGTGGTCTCCACGATTCCAA
genomic: TCGAATTCTCGTTCTCGGCCTAGACAATGCTGGAAAAACCACTATTCTCTgtattctctc ... tttcgtgtagATCGGCTTCAAATGGGTGAGGTGGTCTCCACGATTCCAA
EST: gi|33408309|gb|CF213936.1|CF213936
EST:     TCGAATTCTCGTTCTCGGCCTAGACAATGCTGGAAAAACCACTATTCTCT                         ATCGGCTTCAAATGGGTGAGGTGGTCTCCACGATTCCAA
genomic: TCGAATTCTCGTTCTCGGCCTAGACAATGCTGGAAAAACCACTATTCTCTgtattctctc ... tttcgtgtagATCGGCTTCAAATGGGTGAGGTGGTCTCCACGATTCCAA
EST: gi|33408221|gb|CF213848.1|CF213848
EST:     TCGAATTCTCGTTCTCGGCCTAGACAATGCTGGAAAAACCACTATTCTCT                         ATCGGCTTCAAATGGGTGAGGTGGTCTCCACGATTCCAA
genomic: TCGAATTCTCGTTCTCGGCCTAGACAATGCTGGAAAAACCACTATTCTCTgtattctctc ... tttcgtgtagATCGGCTTCAAATGGGTGAGGTGGTCTCCACGATTCCAA
EST: gi|110406223|gb|EC971789.1|EC971789
EST:     CTAGACAATGCTGGAAAAACCACTATTCTCT                         ATCGGCTTCAAATGGGTGAGGTGGTCTCCACGATTCCAA
genomic: CTAGACAATGCTGGAAAAACCACTATTCTCTgtattctctc ... tttcgtgtagATCGGCTTCAAATGGGTGAGGTGGTCTCCACGATTCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcccaatttctacgatttttcaccctaccatttctgtatatatttcgtgtagATCGGCTTCAAATGGGTGAGGTGGTCTCCACGATTCCAA
                                atttctgtatatattt  TA-rich tract