1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgttctacatgtgtttttgtcgttttttttttttttatatcttcctttttgacgttctatttgtgttcttggattttaaatttatgtgctgtttttgcagGTTATCCTTGATAATTTGTAAAATTCGAAATGGTGCAATGAATCTTGAGATCGCTGGGCTTCATTGGCGTTGGAAAATAGGCCTTTTGCTTGATTAATTT
species | Vitis vinifera |
transcript | Vv04s0008g07320.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTCCTCTTCCTCTTTCAG GTTATCCTTGATAATTTGTAAAATTCGAAATGGTGCAATGAATCTTGAGATEST: gi|351027298|gb|FQ444547.1|FQ444547
genomic: TCTTCCTCTTCCTCTTTCAGgtactttctc ... gtttttgcagGTTATCCTTGATAATTTGTAAAATTCGAAATGGTGCAATGAATCTTGAGAT
EST: TCTTCCTCTTCCTCTTTCAG GTTATCCTTGATAATTTGTAAAATTCGAAATGGTGCAATGAATCTTGAGATEST: gi|351027358|gb|FQ444607.1|FQ444607
genomic: TCTTCCTCTTCCTCTTTCAGgtactttctc ... gtttttgcagGTTATCCTTGATAATTTGTAAAATTCGAAATGGTGCAATGAATCTTGAGAT
EST: TCTTCCTCTTCCTCTTTCAG GTTATCCTTGATAATTTGTAAAATTCGAAATGGTGCAATGAATCTTGAGATEST: gi|349833265|gb|FQ416643.1|FQ416643
genomic: TCTTCCTCTTCCTCTTTCAGgtactttctc ... gtttttgcagGTTATCCTTGATAATTTGTAAAATTCGAAATGGTGCAATGAATCTTGAGAT
EST: TCTTCCTCTTCCTCTTTCAG GTTATCCTTGATAATTTGTAAAATTCGAAATGGTGCAATGAATCTTGAGATEST: gi|349830969|gb|FQ418253.1|FQ418253
genomic: TCTTCCTCTTCCTCTTTCAGgtactttctc ... gtttttgcagGTTATCCTTGATAATTTGTAAAATTCGAAATGGTGCAATGAATCTTGAGAT
EST: TCTTCCTCTTCCTCTTTCAG GTTATCCTTGATAATTTGTAAAATTCGAAATGGTGCAATGAATCTTGAGATEST: gi|351012611|gb|FQ430175.1|FQ430175
genomic: TCTTCCTCTTCCTCTTTCAGgtactttctc ... gtttttgcagGTTATCCTTGATAATTTGTAAAATTCGAAATGGTGCAATGAATCTTGAGAT
EST: TCTTCCTCTTCCTCTTTCAG GTTATCCTTGATAATTTGTAAAATTCGAAATGGTGCAATGAATCTTGAGAT
genomic: TCTTCCTCTTCCTCTTTCAGgtactttctc ... gtttttgcagGTTATCCTTGATAATTTGTAAAATTCGAAATGGTGCAATGAATCTTGAGAT
tttttgacgttctatttgtgttcttggattttaaatttatgtgctgtttttgcagGTTATCCTTGATAATTTGTAAAATTCGAAATGGTGCAATGAATCTTGAGATCGCTGGGCTTCATTGGCGTTGGAAAATAGGCCTTTTGCTTGATTAATTT
ttttgac putative branch site (score: 3)
ctgttttt putative PPT
ttggattttaaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttctacatgtgtttttgtcgttttttttttttttatatcttcctttttgacgttctatttgtgttcttggattttaaatttatgtgctgtttttgcagGTTATCCTTGATAATTTGTAAAATTCGAAATGGTGCAATGAATCTTGAGATCGCTGGGCTTCATTGGCGTTGGAAAATAGGCCTTTTGCTTGATTAATTT
- - - -catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtgc