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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacattccatagaccgccttaaattgattttgtttttccgaaaaggagatttgttagtcatctcaatagatttgtgttatgatagAGAGCTGAGGATGAAACTGCTCGATTATATGCCGAATTCGTGGAGTCATTTCAAGGGGATAATGCGCCAGGGTCAAAGACTTTTGTTCGAGGGGGGACAA

Basic information

species Vitis vinifera
transcript Vv04s0008g06810.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G34030.2 (Glycine max), 3'ss of exon 2
-------gtaacattccatagaccgccttaaattgattttgtttt---tccgaaaaggagatttgttagtcatctcaatag----atttgtgttatgatagAGAGCTGAGGATGAAACTGCTCGATTATATGCCGAATTCGTGGAGTCATTTCAAGGGGATAATGCGCCAGGGTCAAAGACTTTTGTTCGAGGGGGGACAA
        | | ||   | ||  | |  | | ||  || |   ||   |  |   | || ||||  |||| ||    |||     |||||| || ||  ||||||| || ||||| ||||||||  | ||||| || || || |||||||||||||| |||| | | || ||||||||||||||||||||||| || ||||
gtagtccattaaatctaacagtgcccaattagttagttcttgcttgaatttggggaagacatttcctagttattatcataatggaatttgtcttgtg-cagAGAGCAGAAGATGAGACTGCTCGCCTGTATGCTGAGTTTGTAGAGTCATTTCAAGGAGATACTACTCCTGGGTCAAAGACTTTTGTTCGAGGAGGAACAA

upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G25060.1 (Arabidopsis thaliana), 3'ss of exon 1
---------------gtaacattccatagaccgccttaaattgattttg-----tttttccgaaaagga--gatttg-ttagtcatctcaatagatttgtgtt----atgatagAGAGCTGAGGATGAAACTGCTCGATTATATGCCGAATTCGTGGAGTCATTTCAAGGGGATAATGCGCCAGGGTCAAAGACTTTTGTTCGAGGGGGGACAA---
                 | |  | ||| |     | |   | || ||||     ||| | |      ||  |||||| ||  | |    |   | |||  | |    ||   ||| ||| ||||||||||| ||||| || |||   ||||||||||| || |||||||||||||||||  |     | ||||||||||||||||| ||||| |   
gtgagttgaaattttcaatcgattcatcgctattcctgggtagaatttgagaaatttgttcatcggagattgatttgattgattaatcgatggggttttcgatcttaatcgcagAAAGCAGAGGATGAAACGGCTCGTTTGTATCAAGAATTCGTGGAATCGTTTCAAGGGGATAATGCAACTA---CTAAGACTTTTGTTCGAGGTGGGACGATAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttttccgaaaaggagatttgttagtcatctcaatagatttgtgttatgatagAGAGCTGAGGATGAAACTGCTCGATTATATGCCGAATTCGTGGAGTCATTTCAAGGGGATAATGCGCCAGGGTCAAAGACTTTTGTTCGAGGGGGGACAA
                                  aatagattt  TA-rich tract