1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tctccctcttatgatgctctatgttcttctctgtgtcaaaaatattattgagatcatcaaaggttaatggtgaattgggattgtatgttttttgatctagGGAGATCCATTGAAGGTGAAAGTGAACAAATTAACCTCTACAAAGACTCAACTTCCTTACACGTACTATTCTCTGCCTTATTGCCGCCCAGGAAAAATTG
species | Vitis vinifera |
transcript | Vv04s0008g06640.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTCCCACTGCTTCTACCTCCCCGGCGTCAGTCCTCAGGACTTTCAGAAG GGAGATCCATTGAAGGTGAAAGTGAACAAATTAACCTCTACAAAGACTCAAEST: gi|161708427|gb|FC057865.1|FC057865
genomic: CCTCCCACTGCTTCTACCTCCCCGGCGTCAGTCCTCAGGACTTTCAGAAGgtcagttccc ... tttgatctagGGAGATCCATTGAAGGTGAAAGTGAACAAATTAACCTCTACAAAGACTCAA
EST: CCGCCCACTGCTTCTACCTCCCCGGCGTCAGTCCTCAGGACTTTCAGAAG GGAGATCCATTGAAGGTGAAAGTGAACAAATTAACCTCTACAAAGACTCAAEST: gi|110723814|gb|EE099106.1|EE099106
genomic: CCTCCCACTGCTTCTACCTCCCCGGCGTCAGTCCTCAGGACTTTCAGAAGgtcagttccc ... tttgatctagGGAGATCCATTGAAGGTGAAAGTGAACAAATTAACCTCTACAAAGACTCAA
EST: CCTCCCACTGCTTCTACCTCCCCGGCGTCAGTCCTCAGGACTTTCAGAAG GGAGATCCATTGAAGGTGAAAGTGAACAAATTAACCTCTACAAAGACTCAA
genomic: CCTCCCACTGCTTCTACCTCCCCGGCGTCAGTCCTCAGGACTTTCAGAAGgtcagttccc ... tttgatctagGGAGATCCATTGAAGGTGAAAGTGAACAAATTAACCTCTACAAAGACTCAA
tattgagatcatcaaaggttaatggtgaattgggattgtatgttttttgatctagGGAGATCCATTGAAGGTGAAAGTGAACAAATTAACCTCTACAAAGACTCAACTTCCTTACACGTACTATTCTCTGCCTTATTGCCGCCCAGGAAAAATTG
ttttgat putative branch site (score: 4)
tgtttttt CT-rich tract
attgtatgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctccctcttatgatgctctatgttcttctctgtgtcaaaaatattattgagatcatcaaaggttaatggtgaattgggattgtatgttttttgatctagGGAGATCCATTGAAGGTGAAAGTGAACAAATTAACCTCTACAAAGACTCAACTTCCTTACACGTACTATTCTCTGCCTTATTGCCGCCCAGGAAAAATTG
- -ccctctt
- - - - - - - - ctctatg
- - - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgt