Sequence
atgc intronic sequence ATGC exonic sequence...attggcggttttaatatattatcatttgctaatcaaaaaagaatggagaagttggtagttagtactaatcaattttctggttaaacctgatttgtaacagAGCAGAGGTTGTCTTGGATGCTGTAGTAAGCCCACAGAGATTATTGGTGTGTATGAGTCACCAAAGGGACTGACAATTCAAGGAAGAACAGCAATGAGAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g05460.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G07210.2 (Glycine max), 3'ss of exon 1
attggcggttttaatatattatcatttgctaatcaaaa----aagaatggaga-agttggtagttagtactaatcaattttctggttaaacctgatttgtaacagAGCAGAGGTTGTCTTGGATGCTGTAGTAAGCCCACAGAGATTATTGGTGTGTATGAGTCACCAAAGGGACTGACAATTCAAGGAAGAACAGCAATGAGAC--
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-----ctttttcacaacatcgtcttcttttaatccaagcttgtaggataattatagctaataattagtgttaatcaagcttgtggttaaacctgctttgtaacagAGCAGAGGTTGTCTGGGATGCT-TCCCAAATCCTAAAGGCCAATCAACAAACA-AAGACAACAGATCAGAAGATTTTTGGAGCAGCAGTGCATTTGAAATAG
upper sequence: Vv04s0008g05460.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G07210.3 (Glycine max), 3'ss of exon 1
attggcggttttaatatattatcatttgctaatcaaa----aaagaatggaga-agttggtagttagtactaatcaattttctggttaaacctgatttgtaacagAGCAGAGGTTGTCTTGGATGCTGTAGTAAGCCCACAGAGATTATTGGTGTGTATGAGTCACCAAAGGGACTGACAATTCAAGGAAGAACAGCAATGAGAC-------
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----------tcacaacatcgtcttcttttaatccaagcttgtaggataattatagctaataattagtgttaatcaagcttgtggttaaacctgctttgtaacagagcagAGGTTGTCTGGGATGCT-TCCCAAATCCTAAAGGCCAATCAACAAACA-AAGACAACAGATCAGAAGATTTTTGGAGCAGCAGTGCATTTGAAATAGATCAG
upper sequence: Vv04s0008g05460.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G07120.2 (Glycine max), 3'ss of exon 2
attggcggttttaatatattatcatttgctaatcaaa----aaagaatggaga-agttggtagttagtactaatcaattttctggttaaacctgatttgtaacagAGCAGAGGTTGTCTTGGATGCTGTAGTAAGCCCACAGAGATTATTGGTGTGTATGAGTCACCAAAGGGACTGACAATTCAAGGAAGAACAGCAATGAGAC-------
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----------tcacaacatcgtcttcttttaatccaagctcataggctaattatagttaataatttgtgttaatcaagcttgtggttaaacctgctttgcaacagagcagAGGTTGTCTGGGATGCT-TCCCAAATCCAAAAGGCCATGCAACAAATA-AAGACAACAGATCAGAAGATTTTTGGAGCAGCAGCGCATTTGAAATAGATCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gagaagttggtagttagtactaatcaattttctggttaaacctgatttgtaacagAGCAGAGGTTGTCTTGGATGCTGTAGTAAGCCCACAGAGATTATTGGTGTGTATGAGTCACCAAAGGGACTGACAATTCAAGGAAGAACAGCAATGAGAC
tactaatcaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attggcggttttaatatattatcatttgctaatcaaaaaagaatggagaagttggtagttagtactaatcaattttctggttaaacctgatttgtaacagAGCAGAGGTTGTCTTGGATGCTGTAGTAAGCCCACAGAGATTATTGGTGTGTATGAGTCACCAAAGGGACTGACAATTCAAGGAAGAACAGCAATGAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - catttgc
- - - - - - - - - - - - - - - - - - aaaagaa