1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atttggaccagaagtgacccaacacaattatttccattccactggtccatccatctggcttctcttgacttagtgtaaccacaacttagtttcattgcagGTGGTGGCAGACGTTCCTAGTGATACTAGTCATATACTCTGCATGGGCATCTCCATTTGAGCTAGCATTCAAAAAGGTAGCAACTGGGTCACTCATGCCC
species | Vitis vinifera |
transcript | Vv04s0008g04510.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATTTACAACTGAAGAAATATACAATCGCTCCCTATGATCGTAGGTATCG GTGGTGGCAGACGTTCCTAGTGATACTAGTCATATACTCTGCATGGGCATCEST: gi|161709636|gb|FC058420.1|FC058420
genomic: TATTTACAACTGAAGAAATATACAATCGCTCCCTATGATCGTAGGTATCGgtaagtatcc ... ttcattgcagGTGGTGGCAGACGTTCCTAGTGATACTAGTCATATACTCTGCATGGGCATC
EST: TATTTACAACTGAAGAAATATACAATCGCTCCCTATGATCGTAGGTATCG GTGGTGGCAGACGTTCCTAGTGATACTAGTCATATACTCTGCATGGGCATC
genomic: TATTTACAACTGAAGAAATATACAATCGCTCCCTATGATCGTAGGTATCGgtaagtatcc ... ttcattgcagGTGGTGGCAGACGTTCCTAGTGATACTAGTCATATACTCTGCATGGGCATC
tccatccatctggcttctcttgacttagtgtaaccacaacttagtttcattgcagGTGGTGGCAGACGTTCCTAGTGATACTAGTCATATACTCTGCATGGGCATCTCCATTTGAGCTAGCATTCAAAAAGGTAGCAACTGGGTCACTCATGCCC
gtgtaac putative branch site (score: 3)
tttcatt putative PPT
ttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttggaccagaagtgacccaacacaattatttccattccactggtccatccatctggcttctcttgacttagtgtaaccacaacttagtttcattgcagGTGGTGGCAGACGTTCCTAGTGATACTAGTCATATACTCTGCATGGGCATCTCCATTTGAGCTAGCATTCAAAAAGGTAGCAACTGGGTCACTCATGCCC
- - - accagaa
- - - - - - - - - -caacaca
- - - - - - - - - - - - - - - - -ccattcc
- - - - - - - - - - - - - - - - - - - - - - - ccatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacaac