Sequence
atgc intronic sequence ATGC exonic sequence...tttaacaattttccttttatattttcgaaggcatttttaataacagaccattcaatataagattgtaacaagaattaacgtatctgaacttctgttccagCTAACGCTAACAGCGGGTGATTCCGATCTACCTTCTGAAATTTACTGGAATTCCGTGCTTCCAAACACTCCGATGCCTCAAGCTGTGAAGAATAGCCTAC
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33408745|gb|CF214372.1|CF214372EST: TGGTGGTGGAAAGCCATGCTTCTCTGCGATCTGAGCTTTACTGGCCCTTG CTAACGCTAACAGCGGGTGATTCCGATCTACCTTCTGAAATTTACTGGAAT
genomic: TGGTGGTGGAAAGCCATGCTTCTCTGCGATCTGAGCTTTACTGGCCCTTGgtattgccaa ... tctgttccagCTAACGCTAACAGCGGGTGATTCCGATCTACCTTCTGAAATTTACTGGAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaccattcaatataagattgtaacaagaattaacgtatctgaacttctgttccagCTAACGCTAACAGCGGGTGATTCCGATCTACCTTCTGAAATTTACTGGAATTCCGTGCTTCCAAACACTCCGATGCCTCAAGCTGTGAAGAATAGCCTAC
aattaac putative branch site (score: 2)
cttctgttcc putative PPT
aatataagattgtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttaacaattttccttttatattttcgaaggcatttttaataacagaccattcaatataagattgtaacaagaattaacgtatctgaacttctgttccagCTAACGCTAACAGCGGGTGATTCCGATCTACCTTCTGAAATTTACTGGAATTCCGTGCTTCCAAACACTCCGATGCCTCAAGCTGTGAAGAATAGCCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- -aacaatt
- - - - - - - - - - - - - gaaggca
- - - - - - - - - - - - - - - - - - - aataaca
- - - - - - - - - - - - - - - - - - - - - - - -ccattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaagaa