Sequence
atgc intronic sequence ATGC exonic sequence...tcctttaagcagaaattcaaacatatataatcaattcgaattatgaattacgagggaaaaagaaactcaaattgatatattcgatttaatttttttgcagTATGATGATTTGGCTGAGCTCGAATGGCTCTCGAACATCGTTGAGGAATCATTCTCGAGCGAGGACTTGGAAAAGCTTCAGCTAATTTCGGGAATGAAAG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77584244|gb|DV221189.1|DV221189EST: GGTCTCGGAATTACACTGATGCTCATTTCTCTAGCGACCTATGCGTGCCG TATGATGATTTGGCTGAGCTCGAATGGCTCTCGAACATCGTTGAGGAATCA
genomic: GGTCTCGGAATTACACTGATGCTCATTTCTCTAGCGACCTATGCGTGCCGgtaatttcat ... ttttttgcagTATGATGATTTGGCTGAGCTCGAATGGCTCTCGAACATCGTTGAGGAATCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattacgagggaaaaagaaactcaaattgatatattcgatttaatttttttgcagTATGATGATTTGGCTGAGCTCGAATGGCTCTCGAACATCGTTGAGGAATCATTCTCGAGCGAGGACTTGGAAAAGCTTCAGCTAATTTCGGGAATGAAAG
atttaat putative branch site (score: 4)
tttttttgc CT-rich tract
aaactcaaattgatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcctttaagcagaaattcaaacatatataatcaattcgaattatgaattacgagggaaaaagaaactcaaattgatatattcgatttaatttttttgcagTATGATGATTTGGCTGAGCTCGAATGGCTCTCGAACATCGTTGAGGAATCATTCTCGAGCGAGGACTTGGAAAAGCTTCAGCTAATTTCGGGAATGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - aagcaga
- - - - - - - - -caaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattga