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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacatctgtgcatgcacatgcatggttttagaatgtttttttcacttcatataagtgtgaaatcacattaagtcctgttccttttttactgaagGCTTTACAGCAAAGAGAGAAATGGAGTAGCAAATCTAAAAAAGCCGCTCTATGGGAAAGGGCTCATGAACGCAATGCTAAACGTGTGCTTAATTTGATAG

Basic information

species Vitis vinifera
transcript Vv04s0008g02740.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g02740.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G24420.1 (Glycine max), 3'ss of exon 1
gtatacatctgtgcatgcacatgcatggttttagaatgtttttttcacttcatataagtgtgaaatca-cattaagtcctgttccttttttactgaagGCTTTACAGCAAAGAGAGAAATGGAGTAGCAAATCTAAAAAAGCCGCTCTATGGGAAAGGGCTCATGAACGCAATGCTAAACGTGTGCTTAATTTGATAG
          |||  |     ||  |   |  |   | ||||| |       |  ||  ||  | ||| | || | ||   |   ||| |  ||  ||| | |||| ||| |||||||||||| ||||||||| | | |||| ||  | ||||| | ||||||||| || |||||||| ||||| || ||||||||| 
----------gtgagttt-tgtgggttactccattttttttttcttttccttttaaatagtttattcaacttttactctcttgaatttatccctatagGGTGTACAACAACGAGAGAAATGGACTAGCAAATCAAGACAAGCTGCATTGTGGGAGAAGGCTCATGAGCGTAATGCTAAGCGTGTTCTAAATTTGATAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcacttcatataagtgtgaaatcacattaagtcctgttccttttttactgaagGCTTTACAGCAAAGAGAGAAATGGAGTAGCAAATCTAAAAAAGCCGCTCTATGGGAAAGGGCTCATGAACGCAATGCTAAACGTGTGCTTAATTTGATAG
                                 tcctgttcctttttta  CT-rich tract
      ttcatataa  TA-rich tract