Sequence
atgc intronic sequence ATGC exonic sequencegtacataccatcacaatacaaaaaaaactatatatattagtcttgtatttctttttgtttgaagtttgatgaagttatatatatatatatatatatatatatatatatatatatatatatatatatatgtatgtagGTGGACCTTGTGGGTGGATACTATGATGCGGGTGACAATGTGAAATTTGGGCTACCAATGGCTTTCACTATTACGACTTTATCGTGGGCAGCTATTTTTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g02010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G05950.1 (Glycine max), 3'ss of exon 1
gtacataccatcacaatacaaaaaaaactatatatattagtcttgtatttctttttgtttgaagtttgatgaagttatatatatatatatatatatatatatatatatatatatatatatatatatatgtatgtagGTGGACCTTGTGGGTGGATACTATGATGCGGGTGACAATGTGAAATTTGGGCTACCAATGGCTTTCACTATTACGACTTTATCGTGGGCAGCTATTTTTT
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gtacatatctttctatctcttaaaaacacatataaacaaat-taacat--------gcaaagagaatgatagaataatttgtg-atatcttatcatataatta---------------atattaatttatatatagGTGGACCTTGCTGGGGGATACTATGATGCAGGGGACAACGTGAAATATGGGCTCCCCATGGCTTTCACCGTTACTACGCTAGCATGGGGAGCCATTTTTT
upper sequence: Vv04s0008g02010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G05930.1 (Glycine max), 3'ss of exon 1
gtacataccatcacaatacaaaaaaaactatatatattagtcttgtatttctttttgtttgaagtttgatgaagttatatatatatatatatatatatatatatatatatatatatatatatatatatgtatgtagGTGGACCTTGTGGGTGGATACTATGATGCGGGTGACAATGTGAAATTTGGGCTACCAATGGCTTTCACTATTACGACTTTATCGTGGGCAGCTATTTTTT
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gtacatatctttctatctcttaaaaacacatatatac-------acaaattaacatgcaaagagaatgatagaataatttgtg-atatcttatcatataatta---------------atattaatttatatatagGTGGACCTTGCTGGGGGATACTATGATGCAGGGGACAACGTGAAATATGGGCTTCCCATGGCTTTCACCGTTACTACGCTAGCATGGGGAGCCATTTTTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatatatatatatatatatatatatatatatatatatatatatatatgtatgtagGTGGACCTTGTGGGTGGATACTATGATGCGGGTGACAATGTGAAATTTGGGCTACCAATGGCTTTCACTATTACGACTTTATCGTGGGCAGCTATTTTTT
atatatatatatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacataccatcacaatacaaaaaaaactatatatattagtcttgtatttctttttgtttgaagtttgatgaagttatatatatatatatatatatatatatatatatatatatatatatatatatatgtatgtagGTGGACCTTGTGGGTGGATACTATGATGCGGGTGACAATGTGAAATTTGGGCTACCAATGGCTTTCACTATTACGACTTTATCGTGGGCAGCTATTTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT