Sequence
atgc intronic sequence ATGC exonic sequence...ttgattctagtttatattgagttaatttgattttttttttataagtttcaatctttactgctttgattctgatgggctttgatgcttgcaatggatgcagGGTTTTAGAAAAGTCGATCCAGATCGATGGGAGTTTGCAAATGAAGGGTTTTTGGGAGGGCAGAAGCATCTGCTGAAGAACATCAAGAGAAGAAGACATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g01110.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA14G11030.1 (Glycine max), 3'ss of exon 1
ttgattctagtttatattgagttaatttgattttttttttataagtttcaatctttactgctttgattctgatgggctt--tgatgcttgcaa-tggatgcagGGTTTTAGAAAAGTCGATCCAGATCGATGGGAGTTTGCAAATGAAGGGTTTTTGGGAGGGCAGAAGCATCTGCTGAAGAACATCAAGAGAAGAAGACATG
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---agtcgatcacttacttaatgttttacattgatcattgacttggactaatttgaccagtctttgtcttcttgccttttttgttgtgtggaaatgtacacagGGGTTTAGGAAAGTTGATCCTGATAGATGGGAATTTGCAAACGAAGGTTTTTTGGCAGGACAAAGGCACTTATTGAAGACCATTAAGAGAAGAAGAAATG
upper sequence: Vv04s0008g01110.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G05500.1 (Glycine max), 3'ss of exon 1
ttgattctagtttatattgagttaatttgattttttttttataagtttcaatctttactgctttgattc-tgatgggctttgatgcttgcaatggatgcagGGTTTTAGAAAAGTCGATCCAGATCGATGGGAGTTTGCAAATGAAGGGTTTTTGGGAGGGCAGAAGCATCTGCTGAAGAACATCAAGAGAAGAAGACATG
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----------------gtaagcatcattcttctcttcctcgtacttactttaccgtgtttctataactgactgtgaattctaacaactaacattggtgcagGGTTTTAGAAAAATTGATCCTGACAAGTGGGAGTTTGCGAACGAAGGGTTTTTGGCGGGGCAGAGGCAATTGTTGAAGACGATAAAGAGGAGGAGGCACGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30326040|gb|CD009302.1|CD009302EST: ACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGCCAGCTCAACACATAT GGTTTTAGAAAAGTCGATCCAGATCGATGGGAGTTTGCAAATGAAGGGTTT
genomic: ACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGCCAGCTCAACACATATgtaagtgctc ... atggatgcagGGTTTTAGAAAAGTCGATCCAGATCGATGGGAGTTTGCAAATGAAGGGTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcaatctttactgctttgattctgatgggctttgatgcttgcaatggatgcagGGTTTTAGAAAAGTCGATCCAGATCGATGGGAGTTTGCAAATGAAGGGTTTTTGGGAGGGCAGAAGCATCTGCTGAAGAACATCAAGAGAAGAAGACATG
atcttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgattctagtttatattgagttaatttgattttttttttataagtttcaatctttactgctttgattctgatgggctttgatgcttgcaatggatgcagGGTTTTAGAAAAGTCGATCCAGATCGATGGGAGTTTGCAAATGAAGGGTTTTTGGGAGGGCAGAAGCATCTGCTGAAGAACATCAAGAGAAGAAGACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgca