Sequence
atgc intronic sequence ATGC exonic sequence...agaaccccccacatcagaaaaccatttgtatattgatatttcacttcttttgttttttccttttccccattttgcaatgatcttattcattgtggggtagGTTCCATGTGGGTAGACAGCCCCTGGTGATTGTAGCAGATGCAGAGCTCTGTAGAGAAGTTGGAATAAAGAAATTCAAAGACATTCCCAACAGAAGCATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g01100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G34530.1 (Glycine max), 3'ss of exon 1
--agaaccccccacatcagaaaaccatttgtatattgatatttcact-tcttttgttttttccttttccccattttgcaatgatcttattcattgtggggtagGTTCCATGTGGGTAGACAGCCCCTGGTGATTGTAGCAGATGCAGAGCTCTGTAGAGAAGTTGGAATAAAGAAATTCAAAGACATTCCCAACAGAAGCATT
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taaatgcttgataaatcatggcaacttcattttatgcttatcaagccatcttctcactttaactgttgatgatgttgttactat-ttgttta--atggagcagATTTCATATGGGAAGACAACCACTAATCTTGGTAGCAGATCCAGAGCTTTGTAAAGAAGTGGGAATAAAAAAATTCAAAGACATTCCAAACAGAAGCATT
upper sequence: Vv04s0008g01100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G05510.1 (Glycine max), 3'ss of exon 1
agaaccccccacatcagaaaaccatttgtata-ttgatatttcacttcttttgttttttccttttccccattttgcaatgatcttattcattgt-ggggtagGTTCCATGTGGGTAGACAGCCCCTGGTGATTGTAGCAGATGCAGAGCTCTGTAGAGAAGTTGGAATAAAGAAATTCAAAGACATTCCCAACAGAAGCATT
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-tagttaacagtagctgttttttcttagttgagctgattctttattccatgattttcctggttatggttgtaa-atgatgttcttattatttattggtgcagATTCCATATGGGAAGACAGCCACTAATAATTATAGCAGATGCAGAGCTTTGTAAGGAGGCTGGAATAAAAAAATTCAAAGACATTTCAAACAGAAGTATT
upper sequence: Vv04s0008g01100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G05520.1 (Glycine max), 3'ss of exon 2
agaaccccccacatcagaaaaccatt-tgtatattgatatttcacttcttttgttttttccttttccccattttgcaatgatcttattcattgt-ggggtagGTTCCATGTGGGTAGACAGCCCCTGGTGATTGTAGCAGATGCAGAGCTCTGTAGAGAAGTTGGAATAAAGAAATTCAAAGACATTCCCAACAGAAGCATT
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aaaaattcctat-taacaatgttattacttgcattgtttctttatcccatgatttccctagttatggtcgtaa-atgctgttcttattatttattggtgcagATTCCATATGGGAAGACAGCCACTAATAATTATAGCAGATGCAGAGCTTTGTAAGGAGGCTGGAATAAAAAAATTCAAAGACATTTCAAACAGAAGTATT
upper sequence: Vv04s0008g01100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA14G11040.1 (Glycine max), 3'ss of exon 1
-agaaccccccacatcagaaaaccatttgtatattgatatttcacttcttttgttttttccttttccccattttgcaatgatcttattcatt--gtggggtagGTTCCATGTGGGTAGACAGCCCCTGGTGATTGTAGCAGATGCAGAGCTCTGTAGAGAAGTTGGAATAAAGAAATTCAAAGACATTCCCAACAGAAGCATT
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taaatatttctttttccccttctcacctactttgttatttcttttttccataattttcaattttacagttgatgatgttgttcctatttgtttaatggagCAGATTTCATATGGGAAGACAACCACTAATCTTGGTAGCAGATCCAGAGCTTTGTAAAAAAGTGGGTATCAAACAATTCAAAGACATTCCAAACAGAAGC---
upper sequence: Vv04s0008g01100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G26170.1 (Arabidopsis thaliana), 3'ss of exon 1
agaaccccccacatcagaaaaccatttgtatattgatatttcacttcttttgttttttccttttccccattttgcaatg---atcttattcattgtggggtagGTTCCATGTGGGTAGACAGCCCCTGGTGATTGTAGCAGATGCAGAGCTCTGTAGAGAAGTTGGAATAAAGAAATTCAAAGACATTCCCAACAGAAGCATT
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--catctcttatggttgttatgactgagtg-atgaacacaacaagtgtctaaaaaacaaaatgaagacaagtgatcatgtccatttaaattaacaacaaacagATTTCAGATGGGGAGGCAACCACTGATAATAATAGCAGAAGCAGAGCTTTGCAGAGAAGTTGGGATAAAGAAGTTCAAAGATCTTCCAAACAGAAGCATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717756|gb|FC064724.1|FC064724EST: GGTCATGATGTGTTCTCAGTCCTTGCCAAAAAATATGGTCCAATTTTCAG GTTCCATGTGGGTAGACAGCCCCTGGTGATTGTAGCAGATGCAGAGCTCTG
genomic: GGTCATGATGTGTTCTCAGTCCTTGCCAAAAAATATGGTCCAATTTTCAGgtgagttcac ... tgtggggtagGTTCCATGTGGGTAGACAGCCCCTGGTGATTGTAGCAGATGCAGAGCTCTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttttgttttttccttttccccattttgcaatgatcttattcattgtggggtagGTTCCATGTGGGTAGACAGCCCCTGGTGATTGTAGCAGATGCAGAGCTCTGTAGAGAAGTTGGAATAAAGAAATTCAAAGACATTCCCAACAGAAGCATT
ttattcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agaaccccccacatcagaaaaccatttgtatattgatatttcacttcttttgttttttccttttccccattttgcaatgatcttattcattgtggggtagGTTCCATGTGGGTAGACAGCCCCTGGTGATTGTAGCAGATGCAGAGCTCTGTAGAGAAGTTGGAATAAAGAAATTCAAAGACATTCCCAACAGAAGCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - cccccca
- - - - - - - - - aaaccat