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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctcattcttttttaatccaatttcatctttgtggtctggaagatttgatttctgattaggtgcttgttgaatgttctgtgtgaagggatcgagaagCCATCTGCAATTCAACAAAAGGGAATTGTACCCTTCTGTAAGGGTCTGGATGTGATTCAGCAGGCCCAATCCGGTACTGGGAAAACCGCGACTTTCTGCT

Basic information

species Vitis vinifera
transcript Vv04s0008g00990.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 3
--gtcctcattcttttttaatccaatttcatctttgtggtctgga----agatttgatttctgattaggtgcttgttgaatgttctgtgtgaagggatcgagaagCCATCTGCAATTCAACAAAAGGGAATTGTACCCTTCTGTAAGGGTCTGGATGTGATTCAGCAGGCCCAATCCGGTACTGGGAAAACCGCGACTTTCTGCT
   |     |      || |   |  |   | |||||| | |       ||||| ||    | ||    ||| || |   |||| | | | | ||  | |||||||| ||||| ||||| ||||  ||||| || ||||||||||||||||| ||||||||||| ||||| || || |||||||||||||| ||           
gtatgtgtgtaggaacttgaaaaagctatct-tttgtgatttatgtcttagattagaacatt-atctcatgcgtgcttc-tgttttttctta-gGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC-----------

upper sequence: Vv04s0008g00990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G13920.4 (Arabidopsis thaliana), 3'ss of exon 3
------gtcctcattcttttttaatccaatttcatctttgtggtctggaagatttgatttct--gattaggtgcttgttgaatg-----ttctgtgtg----aagggatcgagaagCCATCTGCAATTCAACAAAAGGGAATTGTACCCTTCTGTAAGGGTCTGGATGTGATTCAGCAGGCCCAATCCGGTACTGGGAAAACCGCGACTTTCTGCT
       | || ||  | | |   |   |  |       |   |||       || || |||  ||||||    || |   |||     |||||| |      |||  | |||||||| ||||| ||||| ||||  ||||| || ||||||||||||||||| ||||||||||| ||||| || || |||||||||||||| ||           
gtatttatgcttatggtatgtgtgtaggaacttgaaaaagctatcttttgtgatttatgtcttagattagaacattatctcatgcgtgcttctgttttttcttagGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAAACAGC-----------

upper sequence: Vv04s0008g00990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G54270.1 (Arabidopsis thaliana), 3'ss of exon 3
---------------------gtcctcattcttttttaatccaatttcatctttgtggtctggaagatttgatttctgattaggtgcttgttgaatgttctgtgtgaagggatcgagaagCCATCTGCAATTCAACAAAAGGGAATTGTACCCTTCTGTAAGGGTCTGGATGTGATTCAGCAGGCCCAATCCGGTACTGGGAAAACCGCGACTTTCTGCT
                        |    | || |||  |    |   ||   | |   ||  |   | ||   |||     |    |  |||  || | | | |  |||  |||| ||||| ||||| ||||| ||||  |||||||||||||| || |||||||| |||||||| |||||||| || || |||||||| ||||||||           
gtaagtgaagaaggtttaaagaaacaaccttttgtttgttatgttgggattcctattaactttatcgtatgtgctctttcctgtgattgattggttgatttttttctagGTTTCGAAAAGCCTTCTGCTATTCAGCAAAGAGGAATTGTACCCTTTTGCAAGGGTCTTGATGTGATCCAGCAGGCACAGTCTGGTACTGGAAAAACCGC-----------

upper sequence: Vv04s0008g00990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G54270.2 (Arabidopsis thaliana), 3'ss of exon 3
------------------------------------gtcctcattcttttttaatccaatttcatctttgtggtctggaagatttgatttctgattaggtgcttgttgaatgttctgtgtgaagggatcgagaagCCATCTGCAATTCAACAAAAGGGAATTGTACCCTTCTGTAAGGGTCTGGATGTGATTCAGCAGGCCCAATCCGGTACTGGGAAAACCGCGACTTTCTGCT
                                       |    | || |||  |    |   ||   | |   ||  |   | ||   |||     |    |  |||  || | | | |  |||  |||| ||||| ||||| ||||| ||||  |||||||||||||| || |||||||| |||||||| |||||||| || || |||||||| ||||||||           
gtatctatgcttacggtaagtgaagaaggtttaaagaaacaaccttttgtttgttatgttgggattcctattaactttatcgtatgtgctctttcctgtgattgattggttgatttttttctagGTTTCGAAAAGCCTTCTGCTATTCAGCAAAGAGGAATTGTACCCTTTTGCAAGGGTCTTGATGTGATCCAGCAGGCACAGTCTGGTACTGGAAAAACCGC-----------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttgatttctgattaggtgcttgttgaatgttctgtgtgaagggatcgagaagCCATCTGCAATTCAACAAAAGGGAATTGTACCCTTCTGTAAGGGTCTGGATGTGATTCAGCAGGCCCAATCCGGTACTGGGAAAACCGCGACTTTCTGCT
        ttctgat  putative branch site (score: 3)