Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttcacttgtatgacttgtttgcttttgtttgaaagctactttttttgcgtttattttttgtggtttttgtttctgtaagagttctttgtattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACATTGTCACCCTTCCATCTCAACTTCCAATTGAATTCCTGGAGCCCTCTCC

Basic information

species Vitis vinifera
transcript Vv04s0008g00650.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71863241|gb|DT012296.1|DT012296
EST:     TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATGGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|37183469|gb|CF602823.1|CF602823
EST:     TTCACCTTCTCCGTCTCAACCGACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|71865061|gb|DT014116.1|DT014116
EST:     TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|161720394|gb|FC070186.1|FC070186
EST:     TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|71861590|gb|DT010645.1|DT010645
EST:     TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|161721247|gb|FC070753.1|FC070753
EST:     TTCACCTTCTCCGTCTCAACCGACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|71857680|gb|DT006735.1|DT006735
EST:     TTCACCTTCTCCGTCTCAACCGACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|71858100|gb|DT007155.1|DT007155
EST:     TTCACCTTCTCCGTCTCAACCGACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|161717589|gb|FC066263.1|FC066263
EST:     TTCACCTTCTCCGTCTCAACCGACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|161714427|gb|FC063853.1|FC063853
EST:     TTCACCTTCTCCGTCTCAACCGACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|161708772|gb|FC060064.1|FC060064
EST:     -TCACCTTCTCCGTCTCAACCGACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|71864703|gb|DT013758.1|DT013758
EST:     TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATGGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|71859768|gb|DT008823.1|DT008823
EST:     TTCACCTTCTCCGTCTCAACCGACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|161717170|gb|FC066568.1|FC066568
EST:     TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|110722784|gb|EE099350.1|EE099350
EST:     TTCACCTTCTCCGTCTCAACCGACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|71861002|gb|DT010057.1|DT010057
EST:     TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATGGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|110724849|gb|EE101037.1|EE101037
EST:     TTCACCTTCTCCGTCTCAACCGACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|161715652|gb|FC066797.1|FC066797
EST:     TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|71885642|gb|DT034697.1|DT034697
EST:     CTCAACCGACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: CTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|71881323|gb|DT030378.1|DT030378
EST:     CTCAACCGACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: CTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|110720108|gb|EE095742.1|EE095742
EST:     TTCACCTTCTCCGTCTCAACCGACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|161706212|gb|FC054970.1|FC054970
EST:     TTCACCTTCTCCGTCTCAACCGACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|34542987|gb|CF511219.1|CF511219
EST:     TTCACCTTCTCCGTCTCAACCGACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|71855890|gb|DT004945.1|DT004945
EST:     TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|161719650|gb|FC067994.1|FC067994
EST:     TCCGTCTCAACCGACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|161721651|gb|FC069781.1|FC069781
EST:     TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
EST: gi|33409202|gb|CF214829.1|CF214829
EST:     TTCACCTTCTCCGTCTCAACCGACACACATTCCTATGCCATCAGACCCAG                         GTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA
genomic: TTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGgtcttttctt ... tattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcgtttattttttgtggtttttgtttctgtaagagttctttgtattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACATTGTCACCCTTCCATCTCAACTTCCAATTGAATTCCTGGAGCCCTCTCC
                                      ttctttgt  CT-rich tract
      tttattttttgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atttcacttgtatgacttgtttgcttttgtttgaaagctactttttttgcgtttattttttgtggtttttgtttctgtaagagttctttgtattttgcagGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACATTGTCACCCTTCCATCTCAACTTCCAATTGAATTCCTGGAGCCCTCTCC

- - cacttgt
- - - - - - tgacttg