1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taaacctttatgaagtgttattttccttttgactgttgttgccttgacatggctggtgatggtaaccatttctcaaatttattattttactatgtttcagATTCTATAATTCTCTTCCACCCATAAGCAAGGCTTATGGGACCATGTGTTTGGTTGCCACTACAGCATTCCATTTGGGATTGTTTCCGCCTATGTATACC
species | Vitis vinifera |
transcript | Vv04s0008g00510.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGGGTTTGAATCGGAGATTCTTGTCAGTTTCAATGTCGACTCCAGCAGA ATTCTATAATTCTCTTCCACCCATAAGCAAGGCTTATGGGACCATGTGTTTEST: gi|161721005|gb|FC069627.1|FC069627
genomic: GAGGGTTTGAATCGGAGATTCTTGTCAGTTTCAATGTCGACTCCAGCAGAgtaatttcta ... tatgtttcagATTCTATAATTCTCTTCCACCCATAAGCAAGGCTTATGGGACCATGTGTTT
EST: GAGGGTTTGAATCGGAGATTCTTGTCAGTTTCAATGTCGACTCCAGCAGA ATTCTATAATTCTCTTCCACCCATAAGCAAGGCTTATGGGACCATGTGTTT
genomic: GAGGGTTTGAATCGGAGATTCTTGTCAGTTTCAATGTCGACTCCAGCAGAgtaatttcta ... tatgtttcagATTCTATAATTCTCTTCCACCCATAAGCAAGGCTTATGGGACCATGTGTTT
gacatggctggtgatggtaaccatttctcaaatttattattttactatgtttcagATTCTATAATTCTCTTCCACCCATAAGCAAGGCTTATGGGACCATGTGTTTGGTTGCCACTACAGCATTCCATTTGGGATTGTTTCCGCCTATGTATACC
tggtaac putative branch site (score: 2)
ttttact putative PPT
atttctcaaatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaacctttatgaagtgttattttccttttgactgttgttgccttgacatggctggtgatggtaaccatttctcaaatttattattttactatgtttcagATTCTATAATTCTCTTCCACCCATAAGCAAGGCTTATGGGACCATGTGTTTGGTTGCCACTACAGCATTCCATTTGGGATTGTTTCCGCCTATGTATACC
- - - - - - - - - - - - - - -tgactgt
- - - - - - - - - - - - - - - - - - - -tgccttg
- - - - - - - - - - - - - - - - - - - - - - - acatggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgatgg