1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacaaattttgattcataacggcacctcacaaattcagattcttactgaaaaaaaatggcttcactgtggaagaattttaagtgcttgtgaaggttaggtcaaagtgactgttgtaagatgtggttgtgttgagagtgcagGCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAACGGGCGTATTTTGAAGCGACGGCATTGAGAGAGCAGCGTCGCTGGTGCT
species | Vitis vinifera |
transcript | Vv03s0091g00080.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAG GCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAAEST: gi|161720482|gb|FC070594.1|FC070594
genomic: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAGgtacaaattt ... gagagtgcagGCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAA
EST: ACTTCGTCTACATCGTCATCTCCTCCACTGGATCCTTCGTCATCAAACAG GCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAAEST: gi|46917662|gb|CN546991.1|CN546991
genomic: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAGgtacaaattt ... gagagtgcagGCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAA
EST: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAG GCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAAEST: gi|71863664|gb|DT012719.1|DT012719
genomic: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAGgtacaaattt ... gagagtgcagGCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAA
EST: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAG GCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGGAEST: gi|161712718|gb|FC062290.1|FC062290
genomic: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAGgtacaaattt ... gagagtgcagGCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAA
EST: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAG GCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAAEST: gi|161705568|gb|FC056173.1|FC056173
genomic: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAGgtacaaattt ... gagagtgcagGCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAA
EST: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAG GCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAAEST: gi|161710003|gb|FC058085.1|FC058085
genomic: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAGgtacaaattt ... gagagtgcagGCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAA
EST: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAG GCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAAEST: gi|37184887|gb|CF604240.1|CF604240
genomic: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAGgtacaaattt ... gagagtgcagGCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAA
EST: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAG GCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAAEST: gi|46917661|gb|CN546990.1|CN546990
genomic: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAGgtacaaattt ... gagagtgcagGCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAA
EST: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAG GCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAAEST: gi|161705684|gb|FC056612.1|FC056612
genomic: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAGgtacaaattt ... gagagtgcagGCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAA
EST: ACTTCGTCTACATCGTCATCTCCTCCACTGGATCCTTCGTCATCAAACAG GCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAAEST: gi|110727897|gb|EE105184.1|EE105184
genomic: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAGgtacaaattt ... gagagtgcagGCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAA
EST: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAG GCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAA
genomic: ACTTCGTCTACATCGTCATCTCCTCCAGTGGATCCTTCGTCATCAAACAGgtacaaattt ... gagagtgcagGCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaaattttgattcataacggcacctcacaaattcagattcttactgaaaaaaaatggcttcactgtggaagaattttaagtgcttgtgaaggttaggtcaaagtgactgttgtaagatgtggttgtgttgagagtgcagGCGTTGCCGTACATACGTTGTATAGGGGAATCGTGGCCGATGACGAAGGAACGGGCGTATTTTGAAGCGACGGCATTGAGAGAGCAGCGTCGCTGGTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG