Sequence
atgc intronic sequence ATGC exonic sequencegtaactcagcaatatataggcattgaacctcctaatcattttgatgctcatgtctcttatgttttctatatgattatattttctagGTGCTGGTTTTGCTTCAAACCAGTTATTCCTGTTTGGGCAGATTGACATGCAAATCAAACTAGTAACAGGCCATTCTGCAGGCACAGTTGTGGCCTATTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0088g00650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G27380.1 (Glycine max), 3'ss of exon 1
gtaactcagcaatatataggcattgaacctcctaatcattttgatgctcatgtctcttatgttttctata--tgattatattttctagGTGCTGGTTTTGCTTCAAACCAGTTATTCCTGTTTGGGCAGATTGACATGCAAATCAAACTAGTAACAGGCCATTCTGCAGGCACAGTTGTGGCCTATTA
||| || | | | | ||| || | | || | | || | | |||| | || |||| || || | || ||| |||||||||||||||||||| | || | |||||||| ||||||||||||||||||||||| ||| ||||||||||||| || ||||||||||
gta-ctaattatcaagtttaaattaaatagctgca--atatcaaaactgaagattcttttcttaactatgtttggataattattgcagGATCTGGTTTTGCTTCAAACCAGATGTTTTTATTTGGGCAAATTGACATGCAAATCAAACTAGTGCCAGCTGATTCTGCAGGCACTGTCCTGGCCTATTA
upper sequence: Vv03s0088g00650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G40040.1 (Glycine max), 3'ss of exon 1
---gtaactcagcaatatataggcattgaacctcctaatcattttgatgctcatgtctcttatgttt---tctatatgattatattttctagGTGCTGGTTTTGCTTCAAACCAGTTATTCCTGTTTGGGCAGATTGACATGCAAATCAAACTAGTAACAGGCCATTCTGCAGGCACAGTTGTGGCCTATTA
||||| | | || | | | || | | | | | | | ||||| | | | | | ||||| | || ||| |||||||||| ||||||||| | || | |||||||| ||||||||||||||||||||||| |||| ||||||||||||| || ||||||||||
gtactaactatcaagtttaaattaactagctgcaatatcaaaactaaagattttttttcttaactatgagtttgggttattat-tattgcagGATCTGGTTTTGCGTCAAACCAGATGTTTTTATTTGGGCAAATTGACATGCAAATCAAACTAGTGCCAGGTGATTCTGCAGGCACTGTCCTGGCCTATTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctaatcattttgatgctcatgtctcttatgttttctatatgattatattttctagGTGCTGGTTTTGCTTCAAACCAGTTATTCCTGTTTGGGCAGATTGACATGCAAATCAAACTAGTAACAGGCCATTCTGCAGGCACAGTTGTGGCCTATTA
tattttct CT-rich tract
ttatgttttctatatg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaactcagcaatatataggcattgaacctcctaatcattttgatgctcatgtctcttatgttttctatatgattatattttctagGTGCTGGTTTTGCTTCAAACCAGTTATTCCTGTTTGGGCAGATTGACATGCAAATCAAACTAGTAACAGGCCATTCTGCAGGCACAGTTGTGGCCTATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG