1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcatctggaattccttaagcaggtctctagtttttttttctttaactaattcaaggatgtatctgttttccctgtatctgatatcatagttgtattccagGTGAAGAACCTCCTGAGTCATTGTTTATGAAGGAATTAAAGAGAAGGGGCATGACTCCCACTTCACTGCTTGAGGACAGCAAGAGGGGTGCCTATGGACT
species | Vitis vinifera |
transcript | Vv03s0088g00400.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGGCTTAGGGTTTGTTGCGGAGTTCAGGAAGGTGATAACCAGAGCAATG GTGAAGAACCTCCTGAGTCATTGTTTATGAAGGAATTAAAGAGAAGGGGCAEST: gi|32269456|gb|CD718615.1|CD718615
genomic: AAGGCTTAGGGTTTGTTGCGGAGTTCAGGAAGGTGATAACCAGAGCAATGgtaaatcctt ... tgtattccagGTGAAGAACCTCCTGAGTCATTGTTTATGAAGGAATTAAAGAGAAGGGGCA
EST: AAGGCTTAGGGTTTGTTGCGGAGTTCAGGAAGGTGATAACCAGAGCAATG GTGAAGAACCTCCTGAGTCATTGTTTATGAAGGAATTAAAGAGAAGGGGCAEST: gi|110383842|gb|EC948243.1|EC948243
genomic: AAGGCTTAGGGTTTGTTGCGGAGTTCAGGAAGGTGATAACCAGAGCAATGgtaaatcctt ... tgtattccagGTGAAGAACCTCCTGAGTCATTGTTTATGAAGGAATTAAAGAGAAGGGGCA
EST: AAGGCTTAGGGTTTGTTGCGGAGTTCAGGAAGGTGATAACCAGAGCAATG GTGAAGAACCTCCTGAGTCATTGTTTATGAAGGAATTAAAGAGAAGGGGCAEST: gi|111125038|gb|EE253663.1|EE253663
genomic: AAGGCTTAGGGTTTGTTGCGGAGTTCAGGAAGGTGATAACCAGAGCAATGgtaaatcctt ... tgtattccagGTGAAGAACCTCCTGAGTCATTGTTTATGAAGGAATTAAAGAGAAGGGGCA
EST: AAGGCTTAGGGTTTGTTGCGGAGTTCAGGAAGGTGATAACCAGAGCAATG GTGAAGAACCTCCTGAGTCATTGTTTATGAAGGAATTAAAGAGAAGGGGCAEST: gi|110687557|gb|EE065101.1|EE065101
genomic: AAGGCTTAGGGTTTGTTGCGGAGTTCAGGAAGGTGATAACCAGAGCAATGgtaaatcctt ... tgtattccagGTGAAGAACCTCCTGAGTCATTGTTTATGAAGGAATTAAAGAGAAGGGGCA
EST: AAGGCTTAGGGTTTGTTGCGGAGTTCAGGAAGGTGATAACCAGAGCAATG GTGAAGAACCTCCTGAGTCATTGTTTATGAAAGAATTAAAGAGAAGGGGCAEST: gi|110377814|gb|EC942903.1|EC942903
genomic: AAGGCTTAGGGTTTGTTGCGGAGTTCAGGAAGGTGATAACCAGAGCAATGgtaaatcctt ... tgtattccagGTGAAGAACCTCCTGAGTCATTGTTTATGAAGGAATTAAAGAGAAGGGGCA
EST: AAGGCTTAGGGTTTGTTGCGGAGTTCAGGAAGGTGATAACCAGAGCAATG GTGAAGAACCTCCTGAGTCATTGTTTATGAAGGAATTAAAGAGAAGGGGCA
genomic: AAGGCTTAGGGTTTGTTGCGGAGTTCAGGAAGGTGATAACCAGAGCAATGgtaaatcctt ... tgtattccagGTGAAGAACCTCCTGAGTCATTGTTTATGAAGGAATTAAAGAGAAGGGGCA
ctaattcaaggatgtatctgttttccctgtatctgatatcatagttgtattccagGTGAAGAACCTCCTGAGTCATTGTTTATGAAGGAATTAAAGAGAAGGGGCATGACTCCCACTTCACTGCTTGAGGACAGCAAGAGGGGTGCCTATGGACT
atctgat putative branch site (score: 4)
atatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatctggaattccttaagcaggtctctagtttttttttctttaactaattcaaggatgtatctgttttccctgtatctgatatcatagttgtattccagGTGAAGAACCTCCTGAGTCATTGTTTATGAAGGAATTAAAGAGAAGGGGCATGACTCCCACTTCACTGCTTGAGGACAGCAAGAGGGGTGCCTATGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - ttaagca
- - - - - - - - - - - - - - - - - - - - - -aactaat