Sequence
atgc intronic sequence ATGC exonic sequence...gagcaatttttggaatgcaattcatatttatttatattaactttcttttacctaaaaaattcctggatgtaaattcatctgatatttgttttgtttgtagAGGGCAGGCACAGAGGGAGTTCAAGGTGGAAGTTGAAGCCATTGGAAAAGTAAGACATAAGAACTTGGTAGGCCTAGTTGGGTATTGTGCAGAAGGTCCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g02510.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G01440.1 (Glycine max), 3'ss of exon 1
gagcaatttttggaatgcaattcatatttatttatattaactttcttttacctaaaaaattcctggatgtaaattcatctg-atatttgttttgtttgtagAGGG-CAGGCACAGAGGGAGTTCAAGGTGGAAGTTGAAGCCATTGGAAAAGTAAGACATAAGAACTTGGTAGGCCTAGTTGGGTATTGTGCAGAAGGTCCC
| | ||| ||| | | |||| ||| ||| || | | || || || || |||||||| || || || |||| || ||| |||||| ||| ||||| |||||||| |||||||||||||||||||| | ||||||||| ||||| || ||||||| ||||| ||||||||| |
-atctctttcctgaaataacggaacatttctttgatataatctttctctccccccgccatggcttattg-aaattcatgtgtattgtttaattgtaactaagGGGTCAGGCAGAGAAAGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTGAAACATAAGAATTTGGTGGGGTTAGTTGGATATTGCGCAGAAGGTGCT
upper sequence: Vv03s0063g02510.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G01490.1 (Glycine max), 3'ss of exon 1
gagcaatttttggaatgcaattcatatttattta-tattaactttcttttacctaaaaaattcctggatgtaaattcatctg-atatttgttttgtttgtagAGGGC-AGGCACAGAGGGAGTTCAAGGTGGAAGTTGAAGCCATTGGAAAAGTAAGACATAAGAACTTGGTAGGCCTAGTTGGGTATTGTGCAGAAGGTCCC
| ||| |||| || | |||| |||| ||| ||||| || || || || || |||||||| || || ||| |||| | || |||| ||||| ||| ||||| || ||||| |||||||||||||||||||| | ||||||||| ||||| || ||||||| ||||| ||||||||| |
--tctctttcctgaattaaaggaacatttttttaatatattctttcccttccccttgccatggcttattg-aaattcatgtgtattattgaattgtatctaagGGGCCAGGCAGAGAAAGAGTTTAAAGTGGAGGTTGAAGCCATTGGAAAAGTGAAACATAAGAATTTGGTGGGGTTAGTTGGATATTGCGCAGAAGGTGCT
upper sequence: Vv03s0063g02510.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G12570.1 (Glycine max), 3'ss of exon 1
gagcaatttttggaatgcaattcatatttatttatattaactttcttttacctaaaaaattcctggatgtaaattcatctg-atatttgt-tttgtttg--tagAGGGCAGGCACAGAGGGAGTTCAAGGTGGAAGTTGAAGCCATTGGAAAAGTAAGACATAAGAACTTGGTAGGCCTAGTTGGGTATTGTGCAGAAGGTCCC
| | | || || | ||||| ||| || | | | || || |||||||| | || |||| | || ||| || || || ||| |||||| |||||||| |||||||| |||||||||||||| |||||||| ||||| | | || || ||||||||||||||| |
----atgctgctgcatctttagtatgctaatttagtgtaaaacctttctgtcatatccccatcttattgaaaattcatgcgcattattgtacataattaactagGGGTCAAGCTGAGAAGGAGTTTAAGGTGGAGGTTGAAGCTATTGGAAAAGTAAGGCATAAGAATTTGGTTCGTTTGGTAGGATATTGTGCAGAAGGTGCT
upper sequence: Vv03s0063g02510.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G04780.1 (Glycine max), 3'ss of exon 1
-gagcaatttttggaatgcaattcatatttattta-tattaactttcttttacctaaaaaattcctggatgtaaattcatctgatatttgttttgtttgtagAGGGCAGGCACAGAGGGAGTTCAAGGTGGAAGTTGAAGCCATTGGAAAAGTAAGACATAAGAACTTGGTAGGCCTAGTTGGGTATTGTGCAGAAGGTCCC
| |||| | | | | || || ||| | | | || | | | | || || | || |||||||| || | | | || ||| || || || ||| |||||| || ||||| |||||||| |||||||||||||| ||||| || ||||| | | || || ||||||||||||||| |
ataacaatgctgcatctttagt--atgttaattcagtgtgaaacctttctgtcatattcccatcttatttgaaaattcatgtgcattattatacgtaactagGGGTCAAGCTGAGAAGGAGTTTAAAGTGGAGGTTGAAGCTATTGGAAAAGTAAGGCATAAAAATTTGGTTCGTTTGGTAGGATATTGTGCAGAAGGTGCT
upper sequence: Vv03s0063g02510.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G34500.1 (Arabidopsis thaliana), 3'ss of exon 1
--gagcaatttttggaatgcaattcatatttatttatattaactttcttttacctaaaaaattcctggatgtaaattcatctgatatttgttttgtttgtagAGGGCAGGCACAGAGGGAGTTCAAGGTGGAAGTTGAAGCCATTGGAAAAGTAAGACATAAGAACTTGGTAGGCCTAGTTGGGTATTGTGCAGAAGGTCCC
|| | || ||| | | || | || ||| | ||| |||| | ||||| | | || | || || || || ||||| ||| ||||||||| || ||||| ||||| ||||| ||||||||||||||||||||||| || || | || |||||||| || || |
cttcttgtttactcttatattattgttttataaacagttttgtagattttgatataagaaatgaatctgc-taaatgatggtaaaatataattctatt-cagGGGTCAGGCGGAGAAGGAGTTCAAAGTTGAAGTAGAAGCAATTGGGAAAGTAAGACATAAGAACTTGGTTGGTCTGATGGGATATTGTGCTGACAGTGCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttacctaaaaaattcctggatgtaaattcatctgatatttgttttgtttgtagAGGGCAGGCACAGAGGGAGTTCAAGGTGGAAGTTGAAGCCATTGGAAAAGTAAGACATAAGAACTTGGTAGGCCTAGTTGGGTATTGTGCAGAAGGTCCC
tttgtttt CT-rich tract
atatttgttttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gagcaatttttggaatgcaattcatatttatttatattaactttcttttacctaaaaaattcctggatgtaaattcatctgatatttgttttgtttgtagAGGGCAGGCACAGAGGGAGTTCAAGGTGGAAGTTGAAGCCATTGGAAAAGTAAGACATAAGAACTTGGTAGGCCTAGTTGGGTATTGTGCAGAAGGTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggatg