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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatctgaattctgccctctttttattttatattttttaatttatacctcattatattgtatgtttatgggataaattctctggctcaatcaaacagGAAGGACACAGGCCTTGTCAGATTATTAGCCCCCAGTTGAATGTTGGGGGTCAAATCAAGCGAAATGCTAGCAATGGAAATACAAAAATATTGGTAAATT

Basic information

species Vitis vinifera
transcript Vv03s0063g01780.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0063g01780.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G05180.1 (Glycine max), 3'ss of exon 1
------------------gtgaatctgaattctgccctctttttattttatattttttaatttatacctca--ttatattgtatgttt-----atgggataaattc----------tctggctcaatcaaacagGAAGGACACAGGCCTTGTCAGATTATTAGCCCCCAGTTGAATGTTGGGGGTCAAATCAAGCGAAATGCTAGCAATGGAAATACAAAAATATTGGTAAATT
                   |  || |  | |||    | | |||| | |   |  |     ||  || |||  |||   | |||||||     |   |  ||  ||          |   |||  |||   |||||||| ||  ||||  |||| ||||||||||| |||||| | |||||||||||  |  || ||||||| ||||||||||| |||||  ||   |||||| 
gtaattaaagattaaaactttcatatatactcttatttttgtttaatctgagtgctgcttattgaacttcaacttactctttatgttttcttcacaagcaaagctcaaatatgatgtactgcttgatcgtgcagGAAGGTCAACGGCCAAGTCAAATTATTAGCCCACAGTTGGAGGTTGGGGGTCACTTGGAGAGAAATGCAAGCAATGGAAAGACAAATGTAACTGTAAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatacctcattatattgtatgtttatgggataaattctctggctcaatcaaacagGAAGGACACAGGCCTTGTCAGATTATTAGCCCCCAGTTGAATGTTGGGGGTCAAATCAAGCGAAATGCTAGCAATGGAAATACAAAAATATTGGTAAATT
        attatattgtatgttt  TA-rich tract