Sequence
atgc intronic sequence ATGC exonic sequence...taattcttctgccgacacgctagacatactatttcacaaatgatgtatggacttttttctttaatcacaagttcaacatgggtgtaatatgttgatgcagACTGTCATGTTGGCGAGCAATGATACAATAGCGATCACACTCACCTGGGCACTCTCTCTGCTAATGAACAACCCTCATGCTCTAAAAAAGGCACAAGAAG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713445|gb|FC063723.1|FC063723EST: TCTCTGGCCATGACCATGACCATGATACTGTCATCAAAGC-ACTTGCTTG ACTGTCATGT-GGCGAGCA-TGATACA-TAGCGATCAC-CTCAC-TGGGC-
genomic: TCTCTGGCCATGACCATGACCATGATACTGTCATCAAAGCCACTTGCTTGgtatgtttct ... gttgatgcagACTGTCATGTTGGCGAGCAATGATACAATAGCGATCACACTCACCTGGGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatggacttttttctttaatcacaagttcaacatgggtgtaatatgttgatgcagACTGTCATGTTGGCGAGCAATGATACAATAGCGATCACACTCACCTGGGCACTCTCTCTGCTAATGAACAACCCTCATGCTCTAAAAAAGGCACAAGAAG
tgttgat putative branch site (score: 4)
acttttttctttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taattcttctgccgacacgctagacatactatttcacaaatgatgtatggacttttttctttaatcacaagttcaacatgggtgtaatatgttgatgcagACTGTCATGTTGGCGAGCAATGATACAATAGCGATCACACTCACCTGGGCACTCTCTCTGCTAATGAACAACCCTCATGCTCTAAAAAAGGCACAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - -tctgccg
- - - - - - - - - - - - - - - - - cacaaat
- - - - - - - - - - - - - - - - - - - - - -tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacatg