Sequence
atgc intronic sequence ATGC exonic sequencegtatgggtttgcattcaaatcttcggaatattatggttaacgtttgatgaatgtttcttcatctactcagttcaatgacttagttttttcgtagATTTCGAATGGAGGGTACATGGTGGCATTTGCTGGCCGGAAATATGCAGCAAGATCGACCCCAGTGCTTGTTGCAGATGGTCAACACACCATAACTAGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g01410.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os03g57320.1 (Oryza sativa), 3'ss of exon 1
gtatgggtttgcattcaaatcttcggaatatta--tggttaacgtttgatg-aatgtttct--tcatctactcagtt--caatgacttagttttttcgtagATTTCGAATGGAGGGTACATGGTGGCATTTGCTGGCCGGAAATATGCAGCAAGATCGACCCCAGTGCTTGTTGCAGATGGTCAACACACCATAACTAGTT
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-gattggtcttcatatgattgtccttttttttaactgtttttagctcaatataatgaagccacttgtgtttctaattggccactattttgctatgtgccagGCAACTTCTGGTGGCTACATGGTAGCTTTTGCTGGGAGGAAATATGCAGCAAGATCACCTCCGGTTTTCGTCAGTAACAGCTCATACACCGTGACCAGCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acgtttgatgaatgtttcttcatctactcagttcaatgacttagttttttcgtagATTTCGAATGGAGGGTACATGGTGGCATTTGCTGGCCGGAAATATGCAGCAAGATCGACCCCAGTGCTTGTTGCAGATGGTCAACACACCATAACTAGTT
ttttttcgt CT-rich tract
ttagtttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgggtttgcattcaaatcttcggaatattatggttaacgtttgatgaatgtttcttcatctactcagttcaatgacttagttttttcgtagATTTCGAATGGAGGGTACATGGTGGCATTTGCTGGCCGGAAATATGCAGCAAGATCGACCCCAGTGCTTGTTGCAGATGGTCAACACACCATAACTAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG