Sequence
atgc intronic sequence ATGC exonic sequence...ggaacttgactacttataagacatgtataattggggcctttttaggtggtgccttttagtttgatgttgtgttttaccttattttacatttgtttaacagATAGATGAAAATGTACAAAGGGAAATCATTAACCACAGATCACTGAGGCATCCCAACATCGTCAGATTCAAAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g01080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G15330.1 (Glycine max), 3'ss of exon 1
ggaacttgactacttataagacatgtataattggggcctttttaggtggtgccttttagtttg--atgttgtgttttacc------ttattttacatttgtttaacagATAGATGAAAATGTACAAAGGGAAATCATTAACCACAGATCACTGAGGCATCCCAACATCGTCAGATTCAAAGAG
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---tgttctctacttctcctcaatgctaaattgtagacaat---ggctgtgttggtaaaattgcaatggtaaacctgacgggagaatcatgct-catttgtt-aacagATAGATGAAAATGTACAAAGGGAAATTATAAATCACAGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAG
upper sequence: Vv03s0063g01080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G01240.1 (Glycine max), 3'ss of exon 1
-----ggaacttgactacttataagacatgtataattggggcctttttaggtggtgccttttagtttgatgttgtgttttaccttattttacatttgtttaacagATAGATGAAAATGTACAAAGGGAAATCATTAACCACAGATCACTGAGGCATCCCAACATCGTCAGATTCAAAGAG
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gctgtggggtagagttatttgaagtttggaaggaattgtgttgtgtgcatatggttttccct-gcgtgatattgagctcaactgtgcttt----cttcttaacagATAGATGAAAATGTACGAAGGGAAATTATAAATCACAGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAG
upper sequence: Vv03s0063g01080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G33120.1 (Glycine max), 3'ss of exon 1
ggaacttgactacttataagacatgtataattggggcctttttaggtggtgccttttagtttgatgttgtg--ttttaccttatt-ttacatttgttt---aacagATAGATGAAAATGTACAAAGGGAAATCATTAACCACAGATCACTGAGGCATCCCAACATCGTCAGATTCAAAGAG
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---tgttctctacttctcctcaatgtaaaattgtagacaat---ggttgtgttggtaaaattgctatggtaaacctgacgggagaatcatgcttatttgttagcagATAGATGAAAATGTACAAAGGGAAATTATAAATCACAGATCACTGAGGCATCCTAACATTGTCAGGTTCAAGGAG
upper sequence: Vv03s0063g01080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G29500.1 (Glycine max), 3'ss of exon 1
-----ggaacttgactacttataagacatgtataattggggcctttttaggtggtgccttttagtttgatgttgtgttttaccttattttacatttgtttaacagATAGATGAAAATGTACAAAGGGAAATCATTAACCACAGATCACTGAGGCATCCCAACATCGTCAGATTCAAAGAG
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agctgtggggtaggttaattgaagttcgaaagaaactgtgttgtgtgcatgtggatttcccta-tgtgatgttgagctcaaccgtgtttt----cttctaaacagATAGATGAAAATGTACGAAGGGAAATTATAAATCACCGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAG
upper sequence: Vv03s0063g01080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G33950.1 (Arabidopsis thaliana), 3'ss of exon 1
ggaacttgactacttataagacat-gtataattggggcctttttaggtggtgccttt-tagtttgatgttgtgttttaccttattttacatttgttta-acagATAGATGAAAATGTACAAAGGGAAATCATTAACCACAGATCACTGAGGCATCCCAACATCGTCAGATTCAAAGAG
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---gctttatgacttatgttgtatagtgttgttttaaaggctctaggtgtttcttttgttatggaacgtggtattaatggtgggactttttgtatttgtacagATAGATGAAAATGTAAAAAGGGAGATAATCAACCACAGGTCCTTAAGACATCCCAATATCGTTAGATTCAAAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtggtgccttttagtttgatgttgtgttttaccttattttacatttgtttaacagATAGATGAAAATGTACAAAGGGAAATCATTAACCACAGATCACTGAGGCATCCCAACATCGTCAGATTCAAAGAG
gtttgat putative branch site (score: 5)
tttgttt putative PPT
ttattttacatttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggaacttgactacttataagacatgtataattggggcctttttaggtggtgccttttagtttgatgttgtgttttaccttattttacatttgtttaacagATAGATGAAAATGTACAAAGGGAAATCATTAACCACAGATCACTGAGGCATCCCAACATCGTCAGATTCAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - ggtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtg