Sequence
atgc intronic sequence ATGC exonic sequence...gcaaaattggagttcttatagtggtattcatctttaaatcttaagcattttggctgttagtctcacttgtggaaaatttttcttctgttttctgctgcagGGGCTGTTCTATACATCAAGAAGGAATTCAACTTGCAAGGTGAACCCACTGTAGAGGGTCTAATTGTGGCCATGTCTCTCATCGGAGCCACGTTCATCAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g03940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G48150.1 (Glycine max), 3'ss of exon 1
gcaaaattggagttcttatagtggtattcatctttaaatcttaagcattttggctgttagtctcacttgtggaaaatttttcttctgttttctgctgcagGGGCTGTTCTATACATCAAGAAGGAATTCAACTTGCAAGGTGAACCCACTGTAGAGGGTCTAATTGTGGCCATGTCTCTCATCGGAGCCACGTTCATCAC
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--------gtcatttttttatttatttatttgttcagccaatatttaagataacattcaataacactagtctaattggctttctatgctatactatgcagGATCTATTTTGTACATAAAGAGGGAGTTTAATCTTCAAAGTGAACCCACAATAGAAGGTCTAATTGTGGCCATGTCACTTATTGGAGCCACTGTCGTTAC
upper sequence: Vv03s0038g03940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA14G00330.1 (Glycine max), 3'ss of exon 1
gcaaaattggagttcttatagtggtattcatctttaaatcttaagcattttggctgttagtctcacttgtggaaaatttttcttctgttttctgctgcagGGGCTGTTCTATACATCAAGAAGGAATTCAACTTGCAAGGTGAACCCACTGTAGAGGGTCTAATTGTGGCCATGTCTCTCATCGGAGCCACGTTCATCAC
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--------------------gtcatatttttattcgg---ttagccaattaagataaca--ttcaaccaagtctaattggctttctatgctatgc---agGATCTATTTTGTACATAAAGAGGGAGTTTAATTTACAAAGTGAACCCACAATAGAAGGTCTAATTGTGGCCATGTCACTTATTGGAGCCACTGTCGTTACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110393296|gb|EC958433.1|EC958433EST: TGCTGCTGTGGGAAACTTGTTGCAAGGATGGGATAACGCTACGATTGCTG GGGCTGTTCTATTCATCAAGAAGGAATTCAACTTGCAAGGTGAACCCACTG
genomic: TGCTGCTGTGGGAAACTTGTTGCAAGGATGGGATAACGCTACGATTGCTGgtaatagatt ... tctgctgcagGGGCTGTTCTATACATCAAGAAGGAATTCAACTTGCAAGGTGAACCCACTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattttggctgttagtctcacttgtggaaaatttttcttctgttttctgctgcagGGGCTGTTCTATACATCAAGAAGGAATTCAACTTGCAAGGTGAACCCACTGTAGAGGGTCTAATTGTGGCCATGTCTCTCATCGGAGCCACGTTCATCAC
gtctcac putative branch site (score: 3)
tttttcttctgttttc putative PPT
aaaatttttcttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcaaaattggagttcttatagtggtattcatctttaaatcttaagcattttggctgttagtctcacttgtggaaaatttttcttctgttttctgctgcagGGGCTGTTCTATACATCAAGAAGGAATTCAACTTGCAAGGTGAACCCACTGTAGAGGGTCTAATTGTGGCCATGTCTCTCATCGGAGCCACGTTCATCAC
-caaaatt
- - - - - - - - - - - - - - - - - - - - ttaagca
- - - - - - - - - - - - - - - - - - - - - - - - - tggctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaaaa