1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aaccaacctgcacttttgatgatgagaattttgctgtcattgtaatatatagtatttgtgtcattgattggcaattttgtttgaacttgtgtactttcagGTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCTGTTGGTTGGCATGG
species | Vitis vinifera |
transcript | Vv03s0038g02760.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATCTCTAGCGTCTTTGCTCTGCTCTGCTTTGTCTTGCTCTGTCTCAGAG GTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCTEST: gi|71862417|gb|DT011472.1|DT011472
genomic: CATCTCTAGCGTCTTTGCTCTGCTCTGCTTTGTCTTGCTCTGTCTCAGAGgtgcgtttcg ... gtactttcagGTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCT
EST: CATCTCTAGCGTCTTTGCTCTGCTCTGCTTTGTCTTGCTCTGTCTCAGAG GTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCTEST: gi|71861168|gb|DT010223.1|DT010223
genomic: CATCTCTAGCGTCTTTGCTCTGCTCTGCTTTGTCTTGCTCTGTCTCAGAGgtgcgtttcg ... gtactttcagGTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCT
EST: CATCTCTAGCGTCTTTGCTCTGCTCTGCTTTGTCTTGCTCTGTCTCAGAG GTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCTEST: gi|71864966|gb|DT014021.1|DT014021
genomic: CATCTCTAGCGTCTTTGCTCTGCTCTGCTTTGTCTTGCTCTGTCTCAGAGgtgcgtttcg ... gtactttcagGTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCT
EST: CATCTCTAGCGTCTTTGCTCTGCTCTGCTTTGTCTTGCTCTGTCTCAGAG GTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCTEST: gi|110357277|gb|EC920703.1|EC920703
genomic: CATCTCTAGCGTCTTTGCTCTGCTCTGCTTTGTCTTGCTCTGTCTCAGAGgtgcgtttcg ... gtactttcagGTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCT
EST: TGCTCTGCTTTGTCTTGCTCTGTCTCAGATCATAACG GTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTC
genomic: TGCTCTGCTTTGTCTTGCTCTGTCTCAG------A-Ggtgcgtttcg ... gtactttcagGTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTC
tatatagtatttgtgtcattgattggcaattttgtttgaacttgtgtactttcagGTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCTGTTGGTTGGCATGG
cattgat putative branch site (score: 4)
tactttc putative PPT
aattttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaccaacctgcacttttgatgatgagaattttgctgtcattgtaatatatagtatttgtgtcattgattggcaattttgtttgaacttgtgtactttcagGTTCAATATGGGTGTGGAACAAAACAATCATGATGCAGAGGAGGGAACTCTGTTGGTTGGCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
-accaacc
- - - - - - - - - - gatgagaa
- - - - - - - - - - - - - - - - -ctgtcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattgg