Sequence
atgc intronic sequence ATGC exonic sequence...attcgccaagctttttgtcatagaaatttccaaagttcaggcttatgtgttaatgggatatgtgtttgtggttgatttagtgaaaatatgagttgtgcagGTGGATTCCTGATGGGCAGCTTTGCCCTACAGTTCCAAACAGATCAAACTATATCCATTGGATTGAAGATCTTCTGTCTTCTGACATTATTCCTAAGACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g02100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os02g02880.1 (Oryza sativa), 3'ss of exon 1
-----attcgcca--agctttttgtcatagaaatttccaaagttcaggcttatgtgttaatgggatatgtgtttgtggttgatttagtgaaaatatgagttgtgcagGTGGATTCCTGATGGGCAGCTTTGCCCTACAGTTCCAAACAGATCAAACTATATCCATTGGATTGAAGATCTTCTGTCTTCTGACATTATTCCTAAGACA
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gctcaatatgttattggctaagtgtcatgcatatggtttgtgatcaatatcttat-ttaatctaatatatgaacatgac--atttgtcgctaactaccgt----cagGTGGATTCCGGATGGACAGCTGTGCCCTACTGTGCCAAACAGATCCAATTACATCCACTGGATTGAGGATCTTCTCTCATCAGACCTCATACCACCAATA
upper sequence: Vv03s0038g02100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G090156_T01 (Zea mays), 3'ss of exon 1
attcgccaagctttttgtcatagaaatttccaaagttcaggcttatgtgttaatgggatatgtgtttgtggttgatttagtgaaaatatgagttgt--gcagGTGGATTCCTGATGGGCAGCTTTGCCCTACAGTTCCAAACAGATCAAACTATATCCATTGGATTGAAGATCTTCTGTCTTCTGACATTATTCCTAAGACA
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gcacgc-acactgttcgctctatgctttggaggtgattttcatccagtctagttatgctacacaattgtt-taaacacaattttaatcttagctactgttagGTGGATTCCAGATGGACAGCTCTGCCCGACTGTTCCAAACAGGTCCAACTACATTCACTGGATCGAGGATCTTCTCTCCTCAGATCTGATCCCACCAATA
upper sequence: Vv03s0038g02100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT2G21070.2 (Arabidopsis thaliana), 3'ss of exon 1
attcgccaagctttttgtcatagaaatttccaaagttcaggcttatgtgttaatgggatatgtgtttgtggttgatttagtgaaaatatgagttgtgcagGTGGATTCCTGATGGGCAGCTTTGCCCTACAGTTCCAAACAGATCAAACTATATCCATTGGATTGAAGATCTTCTGTCTTCTGACATTATTCCTAAGACA
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------------gtatgatttcaattgtacaaaggaactagcttttttgctctcaagaacagt-----tagtt-atttacc-aaagtcttatatatatagGTGGATTCCTGATGGACAGCTTTGCCCAACTGTTCCTAATAGATCGAATTACATTCATTGGATCAATGATCTTTTGTCCTCTGGGATCATTCAAAGTTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtgttaatgggatatgtgtttgtggttgatttagtgaaaatatgagttgtgcagGTGGATTCCTGATGGGCAGCTTTGCCCTACAGTTCCAAACAGATCAAACTATATCCATTGGATTGAAGATCTTCTGTCTTCTGACATTATTCCTAAGACA
atttagtgaaaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attcgccaagctttttgtcatagaaatttccaaagttcaggcttatgtgttaatgggatatgtgtttgtggttgatttagtgaaaatatgagttgtgcagGTGGATTCCTGATGGGCAGCTTTGCCCTACAGTTCCAAACAGATCAAACTATATCCATTGGATTGAAGATCTTCTGTCTTCTGACATTATTCCTAAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - -ccaagct
- - - - - - - - - -atagaaa
- - - - - - - - - - - - - - - - - - - - gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaata