1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggataggggtgcgcgccacgtatcctcttggggggtacaaatagagttgatctggacagcggtgcgtgccacgtgtcgtcgggggggtccctacatgcagGACTGTGTCGGATGCGGTTTATGTGCTGGATGCTATAGTAGGTTTCGACCCTAGAGATAGCCAGGCAATAGAAGAAGCATCAAAGTTCATACCGAATGGT
species | Vitis vinifera |
transcript | Vv03s0038g01970.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
gttgatctggacagcggtgcgtgccacgtgtcgtcgggggggtccctacatgcagGACTGTGTCGGATGCGGTTTATGTGCTGGATGCTATAGTAGGTTTCGACCCTAGAGATAGCCAGGCAATAGAAGAAGCATCAAAGTTCATACCGAATGGT
agttgat putative branch site (score: 5)
tccctac putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggataggggtgcgcgccacgtatcctcttggggggtacaaatagagttgatctggacagcggtgcgtgccacgtgtcgtcgggggggtccctacatgcagGACTGTGTCGGATGCGGTTTATGTGCTGGATGCTATAGTAGGTTTCGACCCTAGAGATAGCCAGGCAATAGAAGAAGCATCAAAGTTCATACCGAATGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - aggggtg
- - - - - - - -ccacgta
- - - - - - - - - - - - - - tgggggg
- - - - - - - - - - - - - - - - - - - aaataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcgtgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggggg