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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcgattctgattgactgttgtttttataatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT

Basic information

species Vitis vinifera
transcript Vv03s0038g00790.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os11g06890.2 (Oryza sativa), 3'ss of exon 1
attcgataatttcttctccttcttcttcattttc-tcaataaccggacatagatatatagatcttcgattctgattgactgttgtttttataatttttg-agGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
   ||||      |     || |     |      |    | |     ||     | | |||    |  | || ||   || | |  ||  |  | ||| ||| ||||| || ||||| || ||||||||||| |||||||| |||||||| ||||| |||||| | |||||||| ||||||||||| || || || || ||
--ccgattggagatcggatttgtggggaaaaaaagttgggagctttggattctgttcttgatggggggatttgcttatttgctttcattcgatctgttgcagGCATGGGTGCGGCGTACGGGACGGCGAAGAGCGGCGTCGGCGTGGCGTCCATGGGCGTGATGCGCCCGGAGCTCGTGATGAAGTCCATCGTGCCCGTGGT

upper sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os01g73130.1 (Oryza sativa), 3'ss of exon 1
attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcgattctgattgactgttgttt--ttataatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
|    | ||  || |      ||   |||     || ||   |     |    ||   ||  | ||| | |||| || ||   |||  ||||||||||  ||| ||||| || ||||| || |||||   ||| |||||||| ||||||   ||||| |||||| ||||||||||||||||||||||||| || || || ||
agaaaaaaagatcgtaaaaagctcgatcaaacgatcgatctgcaagtttctgcattacgaattacgaat-tgatgga-tgaaatttggttataattttgcagGCATGGGGGCGGCGTACGGGACGGCTCGGAGCGGCGTCGGGGTGGCGCACATGGGGGTGATGCGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT

upper sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcgattctgattgactgttgtttttataatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
      |||  ||     ||||  ||||| ||||||     || ||  |         |||||  |||   | |||||    |           |   ||| ||||| || || || || || || ||||| ||||| || |||||||| ||||| |||||| | ||||| |||||||||||||| || || || || ||
-----gtaagctcccaatcttccccttcactttctcgg-ggccagatct---------gatctgagatga-ggttgacacacgac------gcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT

upper sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AC216067.3_FGT002 (Zea mays), 3'ss of exon 1
attcgataatttcttct--ccttcttcttcattttctcaataaccggacatagatatatagatcttc-gattctgattg-actgttgtttt-tataattt--ttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
        ||||  ||    |   |     ||||    |||   | | | |        |||    | | | |||| |   ||||| ||||   | ||    |  ||| ||||| || ||||| || || |||||||| |||||||| |||||||||||||| |||||| |||||||||| || |||||||| || || || || ||
-------gatttggtccgatcgggtgtgggatttcagaaatcgacagccttttcccgtcagacaggcaggtcctgactacgctgttcttttgcttgatccgatgcagGCATGGGCGCAGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcgattctgatt-gactgttgtttttataatttttg---agGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
 |      ||    | ||  |||     |||     ||     || | |         |    | |   |||| | | ||||| ||||  |   |   |   ||| ||||| || ||||| || || |||||||| |||||||| |||||||||||||| |||||| |||||||||| || |||||||| || || || || ||
-tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcgggcagttg---ctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G04090.1 (Glycine max), 3'ss of exon 1
---attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcgattctgattgactgtt-gtttttataatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
   ||   |  |             ||||    ||  || ||| |    |||   | | ||||| |    ||   ||  | |||| |   | ||        ||||||||||||||| ||||| || |||||||||||||| || ||||| |||||||| |||||||| |||||||||||||||||||| ||||| || |||||
tgtatataaagaaagaaaaagaaa-ttctgagcttcttcgatagctttgcattt-tctgtagatttatctttaatatgaattgtttgaactgatggagg--aagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G11760.1 (Glycine max), 3'ss of exon 1
-----------------attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcgattctgattgactgttgtttttataatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
                     || ||     |      ||||||| ||  ||    |        |   || ||  |||||  || || |||||  | ||               ||||||||||||||| ||||| || |||||||||||||| || ||||| |||||||| |||||||| || ||||||||||||||||| ||||| || |||||
ttatgcgtatatataaagaaagacaaagaaattcagagcttcttcgttagctttgcattt---tttctgtagatttatctttaatactaattgatggatg--------------aagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGATGGGTGTGATGAGACCAGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
attcgataatttcttctccttcttcttcattttctcaat-aaccggacatagatatatagatcttcgattctgattgactgttgttt--------ttataattt-ttg--agGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
              | ||   | | |  |  |  |  ||  | || |  |  || |   | |  |   ||   |||||      |||        || || ||| |||  ||||||||||||||| ||||| || |||||||||||||| || ||||| || ||||| || ||||| || ||||||||||||||||||||||| || |||||
------------aatttcacacgtgtgaaagtgattgatcgatcgaattttaatcttagggttgtttgtttgaattgataaaaatttgtgaggaattttattttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT

upper sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G00950.1 (Glycine max), 3'ss of exon 1
-----attcgataatttcttctccttct--tcttcattttctcaataaccggacatagatatatagatcttcgattctgattgactgttgtttttataatttttg-agGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
     ||  || | |   |  ||  ||   |||| || ||    |     |     ||  ||| | ||||  ||    || |  |  |||| |||  | | ||   ||||||||||||||| ||||| || || |||||||| || || ||||| || ||||| |||||||| || ||||||||||||||||| ||||| || |||||
cactcatgtgaaagtgattgatcgatcgaatcttaatctt----agggttgtttgaagtgata-aaatctgtgag---gaatttcatttgtatttgaactgttgatagGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTGGGCGTGGCTTCCATGGGTGTGATGAGACCTGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S2_120V6.1 (Physcomitrella patens), 3'ss of exon 1
attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcgattctg-attgactgttgtttttataatttttg-agGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
   | |  | |   || |  |        |      |    | |   ||   | | || |  |  ||  | |  ||   ||       | |  ||   | ||| ||||| ||||| ||||||||||| || ||||| || |||||||| || ||||| || ||| | || ||||| ||||||||||| || || ||||| ||
--gccaccactgtgtcactgttgggaaagtgagacgatgtgcagtgaatcattttgtacagttgtgaaaccgcgttccttgactacgatgttgttggcgcagGCATGGGCGCTGCCTATGGAACGGCCAAAAGTGGAGTTGGAGTGGCATCTATGGGTGTCATGCGACCTGAGCTAGTGATGAAGTCCATCGTCCCAGTGGT

upper sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S45_100V6.1 (Physcomitrella patens), 3'ss of exon 1
attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcgattctg-attgactgttgtttttataatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
|  |  | |  |      | | | |||  | || | ||  ||       || |   | | ||||      |   || ||    |    | |        ||| ||||| ||||| |||||||| || |||||||| || |||||||| || ||||| |||||| |||| |||||||||||||||||||| || ||||| ||
aagcagtgacgttgagggcctat-cttgttgttttgaaggactttgatcagcttgctcgctctttaccgatatgttaacccgaggaggtttttgagcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCAGTGGT

upper sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
--attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcgattctgattgactgttgtttttataatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
  |   |  |  ||   | ||    | |  | |  ||||   |  ||| || |      |  || | |||    ||  | || ||    | |        ||| ||||| ||||| |||||||| || |||||||| || |||||||| || ||||| |||||| |||| |||||||||||||||||||| |||||||| ||
ataacagcgatgttgggcaccccactttcgagtgcctcatcta--ggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT

upper sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S200_79V6.1 (Physcomitrella patens), 3'ss of exon 1
--attcgataatttcttctccttcttcttca-ttttctcaataaccggacatagatatatagatcttcgattctgattgactgttgtttttataatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
    |  |   | |      |||   ||||| ||| ||||   |  ||       |    |  || | ||     | | | |||||  | | || |   | ||| ||||| ||||| ||||| || || |||||||| || |||||||| || ||||| |||||| |||| |||||||||||||||||||| || || || ||
cccgtgaacggtgttgggcacttaagcttcaatttcctcagcta--gggtgcgacttcgaaactcctggacatgaactaaatgttgaatgt-tattgcgtcagGCATGGGCGCTGCTTATGGGACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCTGTGGT

upper sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ33972 (Selaginella moellendorffii), 3'ss of exon 1
attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcgattctgattgactgttgtttttataatt--tttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
                                            | || |    | |   |||| ||| || || |      | |     |||   ||  ||| ||||||||||| ||||| || || ||||| ||||| || |||||||| ||||| || ||||| |||||||| |||||||| ||||| || || || ||
----------------------------------------gtaagccagattctttttcctctttgat-ctaatcgcaatgcgatggatcaatcgattacagGCATGGGAGCTGCCTATGGCACTGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGCGTCATGAGACCGGAGCTCGTGATGAAATCGATCGTCCCGGTGGT

upper sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
--------------------------------------------------------------------------------------attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcgattctgattgactgttgtttttataatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
                                                                                       || |   ||   ||| ||||| |   |  ||||      ||   |    || || | ||||    | |         | || |     |   |||  ||| ||||||||||| |||||||| || |||||||| || |||||||| || ||||| |||||| |||||||||| |||||||| ||||| || ||||| ||
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccac--aatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

upper sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
--------------------------------------------------------------------------------------attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcga--ttctgattgactgttgtttttataatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
                                                                                       || |   ||   ||| ||||| |   |  ||||      ||   |    ||||| | ||||    |  | |  |||  ||  ||   || |   |||  ||| ||||||||||| |||||||| || |||||||| || ||||||||||| ||||| |||||| |||||||||| |||||||| ||||| || ||||| ||
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccac--aatcccgatatttcgatcccaaaattccccattttctcatggaatttt--ctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22012230|gb|BQ797264.1|BQ797264
EST:     -GCACCG-TTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|110399183|gb|EC965677.1|EC965677
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|110732826|gb|EE108450.1|EE108450
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|161708199|gb|FC057843.1|FC057843
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|26262125|gb|CA813188.1|CA813188
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|26257238|gb|CA808301.1|CA808301
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|110687849|gb|EE065729.1|EE065729
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|161709903|gb|FC058063.1|FC058063
EST:     GGCACCGTTTTTCGGATTCCGCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|351017220|gb|FQ435572.1|FQ435572
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|110376865|gb|EC941943.1|EC941943
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|110366218|gb|EC929983.1|EC929983
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|110362221|gb|EC925739.1|EC925739
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|161717215|gb|FC067221.1|FC067221
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|110369154|gb|EC933302.1|EC933302
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|87586397|gb|DY474679.1|DY474679
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|110361267|gb|EC924730.1|EC924730
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|30303548|gb|CB980342.1|CB980342
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAGCGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|110400342|gb|EC966900.1|EC966900
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|110365336|gb|EC928162.1|EC928162
EST:     CGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAATTGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: CGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|37185283|gb|CF604636.1|CF604636
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|110360591|gb|EC923820.1|EC923820
EST:     GGCACCG-TTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGAAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|26262006|gb|CA813069.1|CA813069
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|110407154|gb|EC972750.1|EC972750
EST:     GGCACCG-TTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|37186658|gb|CF606011.1|CF606011
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|161713488|gb|FC063107.1|FC063107
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|161705633|gb|FC054855.1|FC054855
EST:     GCACCGTTTTCCGGATTCCTCGGCCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GCACCGTTTTTCGGATTCCTCGG-CGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|33408540|gb|CF214167.1|CF214167
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|26261836|gb|CA812899.1|CA812899
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|351022760|gb|FQ428669.1|FQ428669
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|161717263|gb|FC065252.1|FC065252
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|161712935|gb|FC062408.1|FC062408
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|26265497|gb|CA816560.1|CA816560
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|26262445|gb|CA813508.1|CA813508
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCCCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|26267702|gb|CA818765.1|CA818765
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|110360215|gb|EC923019.1|EC923019
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|33408110|gb|CF213737.1|CF213737
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|110410700|gb|EC976392.1|EC976392
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|30253379|gb|CB970930.1|CB970930
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
EST: gi|110712681|gb|EE087941.1|EE087941
EST:     GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCT                         GTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA
genomic: GGCACCGTTTTTCGGATTCCTCGGCGCCGCTGCTGCCCTCGTCTTCTCCTgtactcaaac ... aatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatagatatatagatcttcgattctgattgactgttgtttttataatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
                          gattgac  putative branch site (score: 3)
                                               ttttt  putative PPT
                               actgttgtttttataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcgattctgattgactgttgtttttataatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - -ctccttc
- - - - - - - - - - - - - - - - - - aataacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg